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Commit 216ca5b

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minor updates
1 parent 1cf371c commit 216ca5b

2 files changed

Lines changed: 4 additions & 6 deletions

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src/cosmic/resistance.js

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -370,9 +370,9 @@ const uploadFile = async ({
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}
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try {
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record.ncit = mapping[record.diseaseId].ncit || '';
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record.disease = mapping[record.diseaseId].disease || '';
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record.diseaseFamily = mapping[record.diseaseId].diseaseFamily || '';
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record.ncit = mapping[record.diseaseId]?.ncit || '';
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record.disease = mapping[record.diseaseId]?.disease || '';
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record.diseaseFamily = mapping[record.diseaseId]?.diseaseFamily || '';
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record.publication = rid((await _pubmed.fetchAndLoadByIds(conn, [record.pubmed]))[0]);
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const statement = await processCosmicRecord(conn, record, source);
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src/hgnc/index.js

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -203,9 +203,7 @@ const fetchAndLoadBySymbol = async ({
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CACHE[paramType][symbol] = record;
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}
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return record;
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} catch (err) {
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logger.info('Unable to fetch ensembl source for linking records');
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}
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} catch (err) { }
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// fetch from the HGNC API and upload
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const uri = `${HGNC_API}/${paramType}/${
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paramType === 'hgnc_id'

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