lint - inputs.py - fix typing warnings

Author: dustinbleile

pori_python/ipr/inputs.py

@@ -560,7 +560,7 @@ def preprocess_msi(msi: Any) -> Sequence[Dict]:
     return []
 
 
-def preprocess_hrd(hrd: Any) -> Iterable[Dict]:
+def preprocess_hrd(hrd: Any) -> Sequence[Dict]:
     """
     Process hrd input into preformatted signature input.
     HRD gets mapped to corresponding GraphKB Signature CategoryVariants.

tests/test_ipr/test_inputs.py

@@ -50,9 +50,11 @@
     "HLA-C*06",
 }
 EXPECTED_TMB = {TMB_SIGNATURE}
-EXPECTED_MSI = {MSI_MAPPING.get("microsatellite instability")["signatureName"]}
+EXPECTED_MSI = {MSI_MAPPING.get("microsatellite instability", {}).get("signatureName", "")}
 EXPECTED_HRD = {
-    HRD_MAPPING.get("homologous recombination deficiency strong signature")["signatureName"]
+    HRD_MAPPING.get("homologous recombination deficiency strong signature", {}).get(
+        "signatureName", ""
+    )
 }