DEVSU-2797 - lint isort - unsorted imports

Author: dustinbleile

pori_python/ipr/inputs.py

@@ -26,8 +26,8 @@
 from .constants import (
     COSMIC_SIGNATURE_VARIANT_TYPE,
     HLA_SIGNATURE_VARIANT_TYPE,
-    MSI_MAPPING,
     HRD_MAPPING,
+    MSI_MAPPING,
     TMB_SIGNATURE,
     TMB_SIGNATURE_VARIANT_TYPE,
 )

pori_python/ipr/ipr.py

@@ -168,7 +168,7 @@ def convert_statements_to_alterations(
         diseases = [c for c in statement["conditions"] if c["@class"] == "Disease"]
         disease_match = len(diseases) == 1 and diseases[0]["@rid"] in disease_matches
         reference = ";".join([e["displayName"] for e in statement["evidence"]])
-        if statement['relevance']['name'] == 'eligibility':
+        if statement["relevance"]["name"] == "eligibility":
             reference = ";".join([e["sourceId"] for e in statement["evidence"]])
 
         ipr_section = gkb_statement.categorize_relevance(

tests/test_graphkb/test_genes.py

@@ -7,6 +7,7 @@
 
 from pori_python.graphkb import GraphKBConnection
 from pori_python.graphkb.genes import (
+    PREFERRED_GENE_SOURCE_NAME,
     get_cancer_genes,
     get_cancer_predisposition_info,
     get_gene_information,
@@ -18,7 +19,6 @@
     get_pharmacogenomic_info,
     get_preferred_gene_name,
     get_therapeutic_associated_genes,
-    PREFERRED_GENE_SOURCE_NAME,
 )
 from pori_python.graphkb.util import get_rid
 

tests/test_ipr/test_inputs.py

@@ -7,8 +7,8 @@
 
 from pori_python.graphkb.match import INPUT_COPY_CATEGORIES
 from pori_python.ipr.constants import (
-    MSI_MAPPING,
     HRD_MAPPING,
+    MSI_MAPPING,
     TMB_SIGNATURE,
     TMB_SIGNATURE_HIGH_THRESHOLD,
 )
@@ -21,8 +21,8 @@
     preprocess_cosmic,
     preprocess_expression_variants,
     preprocess_hla,
-    preprocess_msi,
     preprocess_hrd,
+    preprocess_msi,
     preprocess_signature_variants,
     preprocess_small_mutations,
     preprocess_structural_variants,