fix: add web docker #63
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| name: GitHub actions status | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: benson1231/bioc-rnaseq:v2 | |
| options: --user root | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Prepare GOSemSim cache directory | |
| run: | | |
| mkdir -p ~/.local/share/GOSemSim | |
| - name: Run Snakemake dry-run | |
| run: | | |
| cd workflow | |
| snakemake -np \ | |
| --configfile ../.test/config/config.yaml | |
| - name: Run Snakemake with test data | |
| run: | | |
| cd workflow | |
| snakemake --cores 2 \ | |
| --use-conda --show-failed-logs \ | |
| --configfile ../.test/config/config.yaml |