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codecov bot commented Nov 27, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 92.04%. Comparing base (2dbe230) to head (e9fd3e0).
Report is 9 commits behind head on develop.

Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #553      +/-   ##
===========================================
+ Coverage    90.99%   92.04%   +1.05%     
===========================================
  Files          126      115      -11     
  Lines         4885     4237     -648     
  Branches       446      376      -70     
===========================================
- Hits          4445     3900     -545     
+ Misses         295      249      -46     
+ Partials       145       88      -57     

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@davidlougheed davidlougheed changed the title chore!: remove unused top-level phenopackets endpoints chore!: remove unused endpoints + FHIR Dec 2, 2024
@davidlougheed davidlougheed changed the title chore!: remove unused endpoints + FHIR chore!: remove unused endpoints + FHIR + Elastic Dec 2, 2024
@davidlougheed davidlougheed marked this pull request as ready for review December 2, 2024 19:01
@davidlougheed davidlougheed requested a review from gsfk December 6, 2024 15:22
@davidlougheed
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@gsfk could you verify i'm not removing anything you use here?

…s-viewsets

# Conflicts:
#	chord_metadata_service/chord/ingest/__init__.py
#	chord_metadata_service/chord/workflows/metadata.py
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@v-rocheleau v-rocheleau left a comment

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Small request, will take a closer look at interpretation changes first thing tomorrow.

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Looks good, validated that the endpoints removed are not used elsewhere.
Few things:

  • There is still the (now unused) fhir_utils.py file, which links to hl7 and FHIR mapping files.
  • restapi/schemas has an unused FHIR_BUNDLE_SCHEMA
  • restapi/semantic_mappings/README.md can probably be removed

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Lint fails, otherwise LGTM!

@davidlougheed davidlougheed merged commit 9f12712 into develop Dec 13, 2024
7 checks passed
@davidlougheed davidlougheed deleted the chore/rm-extraneous-viewsets branch December 13, 2024 17:56
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4 participants