v0.1.12

What's Changed

• v0.1.12 by @huangziwei in #2

Refactored warped-mesh handling and plotting, ensuring the warped plot3v shows both skeleton and mesh when available (possible now thanks to berenslab/pywarper#11 ); This is purely aesthetic, but nice to have.

Also, we introduced soma configuration in v0.1.11 and polished it further in this one. Now you can do:

flatone SEG_ID --soma-init-guess [x|y|z] [min|max] --soma-threshold [0-100;default=99.9] --soma-distance-factor [float; default=4]

for finer control of soma detection.

The default should work for most big cells with relatively big, well-shaped soma. For smaller cells, such as bipolar cells or cells with smaller size soma, try setting --soma-threshold to 90. For cells without soma, you can rerun with a different init-guess, which will act as a fallback soma when no soma is be detected:

flatone SEG_ID --soma-init-guess [x|y|z] [min|max] --overwrite-skeleton --overwrite-profile

Full Changelog: v0.1.11...v0.1.12