pygridfit

Python port of the MATLAB gridfit function (D'Errico, 2006). Work in progress.

Installation

To install the latest tagged version:

pip install pygridfit

Or to install the development version, clone the repository and install it with pip install -e:

git clone https://github.com/berenslab/pygridfit.git
pip install -e pygridfit

By default, pygridfit uses scipy.sparse.linalg.spsolve to solve sparse matrices, which can be slow. For better performance, you can manually install the additional dependencies of scikit-sparse first:

# mac
brew install suite-sparse

# debian
sudo apt-get install libsuitesparse-dev

then run:

pip install -e pygridfit[scikit-sparse]

Usage

See the example notebook for usage.