Hello, and thank you very much for sharing these valuable resources.
While analyzing the CEMBA ATAC dataset, I encountered some questions regarding the cell-type annotations. In the “Single-cell analysis of chromatin accessibility in the adult mouse brain” paper, the annotations shown in Figure 1C are exactly what I am trying to reproduce. I also found the corresponding labels in Supplementary Table 3, but I am not sure how to correctly merge the subclass-level annotations into the broader categories used in Figure 1C.
In addition, I noticed that the file meta/whole.brain.cellname.org in this GitHub repository contains cell subclass-level names and cell subtype-level names that appear to be more detailed than those provided in Supplementary Table 3. I would like to ask:
How were these more detailed cell names obtained?
Is there any documentation, script, or reference that explains how these annotations were generated?
Thank you very much for your time and for providing such an excellent dataset. I would greatly appreciate any guidance you can offer.
Hello, and thank you very much for sharing these valuable resources.
While analyzing the CEMBA ATAC dataset, I encountered some questions regarding the cell-type annotations. In the “Single-cell analysis of chromatin accessibility in the adult mouse brain” paper, the annotations shown in Figure 1C are exactly what I am trying to reproduce. I also found the corresponding labels in Supplementary Table 3, but I am not sure how to correctly merge the subclass-level annotations into the broader categories used in Figure 1C.
In addition, I noticed that the file meta/whole.brain.cellname.org in this GitHub repository contains cell subclass-level names and cell subtype-level names that appear to be more detailed than those provided in Supplementary Table 3. I would like to ask:
How were these more detailed cell names obtained?
Is there any documentation, script, or reference that explains how these annotations were generated?
Thank you very much for your time and for providing such an excellent dataset. I would greatly appreciate any guidance you can offer.