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Updating tools/trim_galore from version 0.6.10 to 2.3.0 #4692

Updating tools/trim_galore from version 0.6.10 to 2.3.0

Updating tools/trim_galore from version 0.6.10 to 2.3.0 #4692

Triggered via pull request June 29, 2026 09:10
Status Failure
Total duration 10m 42s
Artifacts 2

pr.yaml

on: pull_request
Matrix: Setup cache and determine changed repositories
Matrix: Lint tool-list
Matrix: Lint Python scripts
Matrix: Lint R scripts
Matrix: Test tools
Check file sizes
20s
Check file sizes
Matrix: Combine chunked test results
Matrix: Deploy
Check workflow success
3s
Check workflow success
Report deploy status
0s
Report deploy status
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Annotations

4 errors and 3 warnings
Lint R scripts (ubuntu-24.04, release)
Process completed with exit code 123.
Lint R scripts (ubuntu-24.04, release)
package or namespace load failed for ‘styler’ in dyn.load(file, DLLpath = DLLpath, ...):
Combine chunked test results (3.11)
Process completed with exit code 1.
Check workflow success
Process completed with exit code 1.
Lint tool-list (3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: sharesight/find-github-pull-request@v1.3.0. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Lint R scripts (ubuntu-24.04, release)
No files were found with the provided path: rlint_report.txt. No artifacts will be uploaded.
Test tools (0, 3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: SimenB/github-actions-cpu-cores@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
All tool test results
143 KB
sha256:70ee9ecc5eea8e3cf6cb72c945a858e2311f25aa6b9557e06e75f95ec7b2d92f
Tool test output 0
133 KB
sha256:24c1f0b57b409a7cdb540702bea87332acc39ddf4f17f6f82c77c4840286d9e1