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Pull requests: bgruening/galaxytools

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98 Open 1,476 Closed
98 Open 1,476 Closed
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Pull requests list

Rag tool
#1818 opened Mar 19, 2026 by LucaBEMan • Draft
3 of 5 tasks
6
Fix linting and tool tests for scikit-learn tool suite
#1817 opened Mar 18, 2026 by anuprulez • Draft
New Tool Coco2Labelme
#1816 opened Mar 18, 2026 by TuturBaba Loading…
3 of 5 tasks
10
Make genome size mandatory in its branch
#1815 opened Mar 18, 2026 by wm75 Loading…
5 tasks
1
Updating tools/llm_hub from version 2.16.0 to 2.26.0
#1813 opened Mar 16, 2026 by gxydevbot Loading…
Updating tools/cellprofiler_v4 from version 4.2.8 to 4.2.8.1
#1812 opened Mar 16, 2026 by gxydevbot Loading…
Update flexynesis to 1.1.7
#1797 opened Mar 9, 2026 by nilchia • Draft
3 of 5 tasks
3
Updating tools/cellpose_v4 from version 4.0.8 to 4.0.9
#1795 opened Mar 9, 2026 by gxydevbot Loading…
add WebAtlas pipeline 0.5.3
#1794 opened Mar 3, 2026 by dannyspadaro • Draft
1 of 5 tasks
1
Updating tools/trim_galore from version 0.6.10 to 0.6.11
#1793 opened Mar 2, 2026 by gxydevbot Loading…
Add WhisperX model download script and configuration files for version 3.4.2
#1792 opened Feb 27, 2026 by arash77 • Draft
3 of 5 tasks
3
Fix kmetashot tool data table linting
#1787 opened Feb 24, 2026 by paulzierep Loading…
2
Updating tools/markitdown from version 0.1.4 to 0.1.5
#1784 opened Feb 23, 2026 by gxydevbot Loading…
update whisperx to 3.8.1
#1776 opened Feb 14, 2026 by bgruening Loading…
11
Updating tools/wordcloud from version 1.9.4 to 1.9.6
#1762 opened Jan 26, 2026 by gxydevbot Loading…
Improved DM
#1751 opened Jan 13, 2026 by paulzierep Loading…
Handle RateLimitError in LLM Hub tool
#1743 opened Jan 7, 2026 by arash77 Loading…
3
Add Cleaverna tool
#1739 opened Dec 26, 2025 by reyhaneh-tavakoli • Draft
41
Updating tools/rna_tools/sortmerna from version 4.3.6 to 4.3.7
#1737 opened Dec 22, 2025 by gxydevbot Loading…
Updating tools/flexynesis from version 1.1.3 to 1.1.7
#1724 opened Dec 1, 2025 by gxydevbot Loading…
1
Add BioStudies upload tool
#1716 opened Nov 6, 2025 by davelopez Loading…
2
Feat: Add two additional cellprofiler modules
#1714 opened Nov 5, 2025 by rmassei Loading…
2
Exploring the addition of groups and their purpose in YOLO configuration
#1687 opened Oct 14, 2025 by TuturBaba • Draft
1
Updating tools/image_processing/imagemagick from version 7.1.2-2 to 7.1.0.43
#1677 opened Sep 8, 2025 by gxydevbot Loading…
8
update rbpbench
#1658 opened Jul 17, 2025 by PlushZ Loading…
2
ProTip! What’s not been updated in a month: updated:<2026-02-22.