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lines changed Original file line number Diff line number Diff line change 1717 python -m esp_dnn.predict -m ligand -i . -o . &&
1818 esp-surface-generator ligand.pdb.pqr ligand.pdb.tmesh &&
1919 sh-coeff-calculator . &&
20- micromamba run -n lirasearch python /opt/scripts/lira_search_sdf.py --in_file rid_coeffs.csv --out_file output --out_keys keys.txt --database /opt/storage /rid_coeffs.csv --num_results $num_results &&
20+ micromamba run -n lirasearch python /opt/scripts/lira_search_sdf.py --in_file rid_coeffs.csv --out_file output --out_keys keys.txt --database ${database_select.fields.path} /rid_coeffs.csv --num_results $num_results &&
2121 mkdir search_results && rocksdb_to_sdf ${database_select.fields.path} keys.txt search_results &&
2222 micromamba run -n lirasearch python /opt/scripts/lira_super.py --target ligand.pdb --folder search_results &&
2323 cat search_results/*rotated.sdf >> '$output_sdf'
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