andes 0.2.0

What's Changed

• feat: PTM-refinement cascade + out-of-core mmap candidate index by @ypriverol in #1
• andes --rescore: integrated search + Percolator (PEP/q into QPX) by @ypriverol in #2
• QPX OpenMS-compat: protein_groups, external-decoy suffix, percolator features in psm_metavalues by @ypriverol in #4
• MS-GF+ independence hardening: remove Java oracle, gate .param loader, scrub naming by @ypriverol in #3
• Remove the MS-GF+ .param reader/migrator (no MS-GF+ code) by @ypriverol in #6
• Model-independence gate: fail if any shipped model is the MS-GF+ seed (E1) by @ypriverol in #5
• Release v0.2.0 — field-beating winning model bundle + --score auto by @ypriverol in #7

New Contributors

• @ypriverol made their first contribution in #1

Full Changelog: https://github.com/bigbio/andes/commits/v0.2.0

What's Changed

• feat: PTM-refinement cascade + out-of-core mmap candidate index by @ypriverol in #1
• andes --rescore: integrated search + Percolator (PEP/q into QPX) by @ypriverol in #2
• QPX OpenMS-compat: protein_groups, external-decoy suffix, percolator features in psm_metavalues by @ypriverol in #4
• MS-GF+ independence hardening: remove Java oracle, gate .param loader, scrub naming by @ypriverol in #3
• Remove the MS-GF+ .param reader/migrator (no MS-GF+ code) by @ypriverol in #6
• Model-independence gate: fail if any shipped model is the MS-GF+ seed (E1) by @ypriverol in #5
• Release v0.2.0 — field-beating winning model bundle + --score auto by @ypriverol in #7

New Contributors

• @ypriverol made their first contribution in #1

Full Changelog: https://github.com/bigbio/andes/commits/v0.2.0

What's Changed

• feat: PTM-refinement cascade + out-of-core mmap candidate index by @ypriverol in #1
• andes --rescore: integrated search + Percolator (PEP/q into QPX) by @ypriverol in #2
• QPX OpenMS-compat: protein_groups, external-decoy suffix, percolator features in psm_metavalues by @ypriverol in #4
• MS-GF+ independence hardening: remove Java oracle, gate .param loader, scrub naming by @ypriverol in #3
• Remove the MS-GF+ .param reader/migrator (no MS-GF+ code) by @ypriverol in #6
• Model-independence gate: fail if any shipped model is the MS-GF+ seed (E1) by @ypriverol in #5
• Release v0.2.0 — field-beating winning model bundle + --score auto by @ypriverol in #7

New Contributors

• @ypriverol made their first contribution in #1

Full Changelog: https://github.com/bigbio/andes/commits/v0.2.0