feat: update relink container to Scout 2.1.0 - #15

Merged

ypriverol merged 11 commits into

mainfrom

codex/relink-container-1-1-0

Jun 3, 2026

Commits on Apr 23, 2026

Commits on May 11, 2026

Merge remote-tracking branch 'origin/main' into codex/relink-container-1-1-0
ypriverol
committed
fd3e5e6
fix: unify relink CLI as `relink <tool>` and fix Scout startup

ypriverol
and
claude
committed
ec9bda9
refactor: expose relink tools directly on PATH + GATK-style --java-options

ypriverol
and
claude
committed
e66d013

Commits on May 12, 2026

fix: tolerate non-root UID in Scout (CSMSL Protease init crash)

ypriverol
and
claude
committed
499ccaf
fix: UID-namespace CSMSL XDG_CONFIG_HOME and exercise -search in verify

ypriverol
and
claude
committed
135d364

Commits on Jun 3, 2026