v2.1.0 - Sao Pablo

QPX and MuData Release

First introduction to QPX and MuData into quantmsdiann.

What's Changed

• Move input type validation before SDRF parsing by @ypriverol in #65
• Add --mzml_convert parameter for native Thermo .raw support by @ypriverol in #68
• Default local_input_type to raw and enforce supported local file formats by @Copilot in #64
• Minor update by @yueqixuan in #72
• Improve raw data file extension handling in input channel creation by @ypriverol in #69
• chore: nf-core 4.0.2 template sync by @ypriverol in #77
• feat: restrict --input to .sdrf.tsv extension by @ypriverol in #78
• feature: .wiff Dataset Support by @yueqixuan in #73
• Add optional PRIDE Archive download via pridepy by @ypriverol in #80
• Sync from master by @ypriverol in #81
• Claude/fix pr 82 q dwst by @ypriverol in #83
• fix: address GitHub issue for BlockedFlags by @yueqixuan in #84
• docs: add guide for reproducing DIA-NN GUI runs by @ypriverol in #88
• Integrate QPX Parquet and MuData export into workflow by @Shen-YuFei in #87
• Update sdrf-pipelines to 0.1.4 by @ypriverol in #89
• Fix QPX export: disable by default and require project_accession by @ypriverol in #90
• Update WIFF support and update documentation for QPX by @Shen-YuFei in #91
• Release 2.1.0 - Integration with wiff converter by @ypriverol in #82

New Contributors

• @Copilot made their first contribution in #64
• @Shen-YuFei made their first contribution in #87

Full Changelog: v2.0.0...v2.1.0