v0.1.2 - Include the DIANN mod location handling

What's Changed

• improving parameters conversion for DIANN mod localization by @ypriverol in #277
• minor changes in dev branch diann convert by @ypriverol in #279
• update of the templates and also DIANN converter by @ypriverol in #278
• minor changes by @ypriverol in #280

Full Changelog: v0.1.1...v0.1.2

v0.1.1: MHCquant and DIANN converts added

What's Changed

• minor changes by @ypriverol in #269
• update in the templates by @ypriverol in #270
• Major changes for the new template structure by @ypriverol in #272
• Fixing some issues related with OLS by @ypriverol in #273
• Add MHCquant SDRF converter by @jonasscheid in #274
• MHCquant support and other small bugs by @ypriverol in #275
• DIANN convert for SDRF by @ypriverol in #276

New Contributors

• @jonasscheid made their first contribution in #274

Full Changelog: v0.1.0...v0.1.1

v0.1.0 - Dynamic template loading

What's Changed

• Type checking and chores for min Python version 3.10 by @fabianegli in #205
• Maintenance by @fabianegli in #206
• Maintenance by @fabianegli in #208
• Fix TMT label set inference logic by @fabianegli in #211
• Ypriverol pydantic by @fabianegli in #210
• Add dependencies and configs for MyPy and pytest in pre-commit and poetry env by @fabianegli in #217
• Major Fix to TMTplex experiments by @ypriverol in #221
• test --version and --help CLI options by @fabianegli in #227
• test tmt plex inference by @fabianegli in #226
• Use Poetry in the Python application GHAction by @fabianegli in #233
• fix for inconsistency in technology type by @noatgnu in #234
• Don't validate the same rule twice AND Update age validation by @fabianegli in #229
• add more test cases by @daichengxin in #235
• Search for TMT and iTRAQ mods in lowercase by @johnne in #237
• Restructure by @jpfeuffer in #248
• Next major release by @fabianegli in #219
• dyn. ver. fixes and better validation API by @jpfeuffer in #250
• Merge dev fixes by @jpfeuffer in #253
• Major changes to move from local templates to sdrf-templates modules by @ypriverol in #254
• Minor changes in the validator by @ypriverol in #256
• Minor changes by @ypriverol in #260
• Minor changes in the code about README by @ypriverol in #261
• Additional minor changes from the review of the dev PR by @ypriverol in #262
• Dev by @ypriverol in #263
• major changes in the structure towards dynamic sdrf-templates by @ypriverol in #255
• small changes in the AGENT files by @ypriverol in #264
• Dev by @ypriverol in #265
• default to all extras for conda and readme by @jpfeuffer in #266
• Minor changes by @ypriverol in #267

New Contributors

• @noatgnu made their first contribution in #234
• @johnne made their first contribution in #237

Full Changelog: v0.0.33...v0.1.0

v0.0.33 - Small bug fixing related with Unimod

What's Changed

• read mmu and return Da for tolerances by @fabianegli in #228
• Fixed Unimod match bugs by @daichengxin in #242

Full Changelog: v0.0.32...v0.0.33

v0.0.32

What's Changed

• ignore case in original extension by @daichengxin in #183
• 🎨 applymap depreceated since pandas 2.1 by @enryH in #186
• Conda build maintenance by @fabianegli in #188
• Add version number consistency check for conda recipe by @fabianegli in #189
• support TMT18plex by @daichengxin in #192
• Tolerence_handling by @enryH in #195
• update dev branch by @ypriverol in #199
• Add conda recipe improvements to dev branch by @fabianegli in #202
• Prominently display the SDRF validation capability in the README.md by @fabianegli in #204
• Dev by @ypriverol in #200
• TMTplex inference fix release by @fabianegli in #220
• fix label set inference in writeTwoTableExperimentalDesign by @fabianegli in #222

New Contributors

• @enryH made their first contribution in #186

Full Changelog: v0.0.31...v0.0.32

v0.0.31

What's Changed

• Add setuptools dependency by @levitsky in #179
• Fix ValueError on enzyme validation by @levitsky in #178
• Version increased for release by @ypriverol in #181
• Fix column order validation by @levitsky in #182

Full Changelog: v0.0.30...v0.0.31

v0.0.30

What's Changed

• small update in the cache ontologies and update in all of them by @ypriverol in #174

Full Changelog: v0.0.29...v0.0.30

v0.0.29

What's Changed

• Skip OLS internet check, use instead local parquet files by @ypriverol in #171: This PR includes a new option --use_ols_cache_only that disables the use of OLS service (internet check); instead, it uses the parquet local files.

Full Changelog: v0.0.28...v0.0.29

v0.0.28

What's Changed

• Big PR with multiple validations - [DO NOT MERGE YET] by @ypriverol in #169
• Change the logic of validation, by default, everything is validated, and three variables are now introduced to skip some of the validations: --skip_ms_validation, --skip_factor_validation, --skip_experimental_design_validation

Full Changelog: v0.0.27...v0.0.28

Release v0.0.27

What's Changed

• OLS refactoring. by @ypriverol in #168

• Check if the OLS is running.
• Check if the given ontology, for example PSI-MS, is available.
• All tests related with the OLSClient are updated.
• Conda build tested.

Full Changelog: v0.0.26...v0.0.27