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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -15,14 +15,14 @@ conda create -n deblurenv python=3.8 numpy

and activate it using:
```
source activate deblurenv
conda activate deblurenv
```

(note you will need to activate this environment every time you want to use Deblur)

Install Deblur dependencies and Deblur itself:
```
conda install -c bioconda -c biocore VSEARCH>=2.7.0 MAFFT>=7.394 SortMeRNA=2.0 biom-format deblur
conda install -c bioconda -c biocore "VSEARCH>=2.7.0" "MAFFT>=7.394" SortMeRNA=2.0 biom-format deblur
```

N.B. Some dependencies are version restricted at the moment but for different reasons. SortMeRNA 2.1 has a different output format which Deblur is not compatible with yet. A review of the changelog did not reveal any remarkable notes (e.g., bugs) about the reasons for the differences. In testing, the differences affected <0.1% of the sOTUs. As a precaution, we are advising the use of these specific versions for consistency with the manuscript.
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