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biocore
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Make concurrent one_off_* and ordination computes safe in one process
- #88
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Make concurrent one_off_* and ordination computes safe in one process
#88
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biocore/unifrac-binaries:main
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Commits on Jul 30, 2026
Add failing concurrency tests for in-memory computes (RED)
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Make progress-report state safe for concurrent computes (GREEN)
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Bound n_substeps to the stripe range it divides
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Add one_off_matrix_inmem_v4 with a per-call subsample seed
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Commits on Jul 31, 2026
Document the concurrency contract, and guard api.hpp
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Document that a seeded subsample reproduces per thread count only
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Gate the in-memory static archive in CI
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Add per-call seeds to the ordination entry points
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Simplify the concurrency work, and make pcoa*_seeded reachable
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Ignore build artifacts that were loose in the tree
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Tighten the concurrency section
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Stop asserting a GPU PERMANOVA p-value that skbb cannot reproduce
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Point the PERMANOVA GPU gate at the upstream issue
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Log which accelerator mode the PERMANOVA concurrency suite ran in
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Let the PERMANOVA p-value step by one count, and drop the acc query
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Commits on Aug 1, 2026
Act on the code review of the PERMANOVA tolerance change
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Report an unloadable accelerator variant once, not on every probe
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CI: take Rcpp from cloud.r-project.org, not one university mirror
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Commits on Aug 3, 2026
Add device_id to the v4 in-memory entry points
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Act on the PR review: keep v3 dispatched, drop EXTERN from pcoa*_seeded
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Commits on Aug 4, 2026
CI: match the pcoa* symbols by demangled name in the inmem check
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Put inmem v3 back in api.cpp, and drop the conditional compilation
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Drop the GPU PERMANOVA writeup; upstream bug, separate PR
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Remove SIGUSR1 progress reporting
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Give unsupported_device a status message before it is read out of bounds
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Delete progressbar(), the last unused progress-reporting code
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Commits on Aug 7, 2026
Cut the build-log commentary out of the comments
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