GitHub - biocyberman/METAREP: METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 60 Commits
app		app
cake		cake
data		data
doc		doc
mysql		mysql
scripts		scripts
solr		solr
vendors		vendors
.htaccess		.htaccess
LICENSE.txt		LICENSE.txt
README		README
index.php		index.php

Repository files navigation

METAREP DIRECTORIES

/app     web application files
/cake    cake framework files
/data    example dataset*
/scripts perl and R scripts
/doc     documentation
/mysql   mysql database dump
/solr    solr/lucene configuration files
/vendors 3rd-party php tools

Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
for additional information

*De Long vertical ocean depth profile dataset (7 libraries)
http://www.scienceonline.org/cgi/content/full/311/5760/496
JCVI's metagenomics annotation pipeline has been used to annotate the raw reads
http://standardsingenomics.org/index.php/sigen/article/view/sigs.651139