biodosetools 3.6.1

Removed {pkgload} and {htmltools} as package dependencies.
Server modules now use moduleServer(), as recommended in {shiny} >= 1.5.0 (see https://shiny.rstudio.com/articles/modules.html).
Updated golem_utils_ui.R and related unit tests to match {golem} 0.3.x (see ThinkR-open/golem@61b9063).
Updated CITATION file.
Updated vignettes.

Improvements

Updated LQ and L formulas to use lambda instead of Y for yield in parse_model_formula(), list_fitting_formulas(), and help dialogues.
Removed unnecessary {base} namespace in solve() call.
Removed legacy gardner_confidence_table data (deprecated in 585e7b4).
Updated get_cov_ZIP_ML() to match expressions on manuscript, introducing minor calculation optimisation.
Improved fit_maxlik_method() by removing unused local variables and redundant calls.
Switched message() to cli::cli_alert_warning() in fit() function when switching from glm() to ML optimization.
Updated match_names() to return input x, akin to match.arg() from {base}.
Updated default values for assessment and whole-body error method selection in mod_estimation_micro_ui().
Added mean and std_err column renaming to calculate_aberr_table() when type = "case" depending on new aberr_module parameter.
Added aberr_module validation using match.arg() in *_aberr_table(), estimate_*(), prepare_maxlik_count_data(), fit*() functions.
Updated unit tests for names_from_model_formula() and parse_model_formula().
Updated app_config.R and test-golem-recommended.R unit tests.
Added unit test for load_rmd_report().
Added basic testServer() unit tests for all mod_*_server() modules.

Updated "Irradiation conditions" boxes so they are no longer collapsed by default in mod_fitting_*_ui.R modules.

Return case data as_tibble() in calculate_aberr_table() for consistency with count data.
Minor formatting fix in cli::cli_alert_info() call.
Fixed pi_estimate value in est_metaphases_frac data frame in estimate_partial_body_dolphin(), as pointed out by Gaëtan.
Fixed issue with match_names() not correctly stopping, and added unit tests for it.
Fixed misconstructed column selection in calculate_aberr_table() when type = "case".
Added est_metaphases_frac data frame to explicitly return f (1 - pi_est) in estimate_partial_body_dolphin() (closes #29).
Updated deprecated .data calls inside {tidyselect} selections (see https://www.tidyverse.org/blog/2022/10/tidyselect-1-2-0/).

Removed unused files in data-raw.
Deprecated model_formula with no intercept in parse_model_formula(), names_from_model_formula(), prepare_maxlik_count_data(), fit_maxlik_method(), and mod_estimation_fit_curve_hot_server().
Removed golem_utils_server.R.
Purged calculate_decision_threshold*() functions and mentions in UI and server modules, as this will be rewritten from scratch.
Removed calculate_decision_threshold from _pkgdown.yml.