A repository that contains analysis code for the paper "Spatial variability of the microbiome in chronic rhinosinusitis is associated with the patients' clinical characteristics but not with sinus ostia occlusion" by Szaleniec et al. 2022.
The analysis is split in two folders, microbiome-analysis and picrust2-analysis.
In the first folder, the microbiome analysis using QIIME2 is stored. In folder microbiome-analysis/artifacts you may find a custom feature classifier produced with the use of RESCRIPt.
In the second folder, we performed functional prediction using PICRUSt2 & analyzed the predictions obtained from the pipeline.
