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t/SABlastPlus.t failures with makeblastdb from ncbi-blast+ 2.16.0

Status: Open.

#62 In bioperl/bioperl-run;

· emollier opened on Jul 30, 2024

Where to acquire Helicobacter_pylori.mod needed by t/Genemark.hmm.prokaryotic.t ?

Status: Open.

#60 In bioperl/bioperl-run;

· mr-c opened on Feb 16, 2020

Bug in Eponine test

Status: Open.

#59 In bioperl/bioperl-run;

· dionys opened on Mar 12, 2019

BEDTools issues

Status: Open.

#58 In bioperl/bioperl-run;

· cjfields opened on Feb 8, 2019

Build.PL mentions Bio::Run that does not exist

Status: Open.

#57 In bioperl/bioperl-run;

· carandraug opened on Feb 5, 2019

Issue with Bowtie in test suite

Status: Open.

#55 In bioperl/bioperl-run;

· tillea opened on Jan 26, 2018

bug in Bio::Tools::Run::Alignment::StandAloneFasta

Status: Open.

#53 In bioperl/bioperl-run;

· cjfields opened on Sep 17, 2017

Test with latest bowtie is failing

Status: Open.

#52 In bioperl/bioperl-run;

· tillea opened on Sep 16, 2017

SABlastPlus tests fail with latest version of BLAST+

Status: Open.

#51 In bioperl/bioperl-run;

· cjfields opened on Sep 11, 2017

'cpgplot' input sequence not recognized

Status: Open.

#47 In bioperl/bioperl-run;

· piatekmj opened on Feb 24, 2017

infernal does not contan cmscore since version 1.1

Status: Open.

#45 In bioperl/bioperl-run;

· tillea opened on Dec 16, 2016

 ·  

1.7.3

Index on cpanm?

Status: Open.

#41 In bioperl/bioperl-run;

· keiranmraine opened on Oct 7, 2016