Update to sssom-pydantic v0.4.0 and sssom-curator v0.3.0

[cthoyt]

This PR updates Biomappings to use the newer version of sssom-pydantic and sssom-curator. Importantly, this fixes a bug with the canonical sorting of SSSOM TSV files to be conformant with the spec. It also changes the way that unsure mappings are stored to use the newly added reviewer_agreement field with a value of 0.0.

This is the script used to update the "unsure" mappings file

from pathlib import Path

import click
import sssom_pydantic
from curies.vocabulary import lexical_matching_process
from sssom_pydantic import SemanticMapping

UNSURE_PATH = Path(__file__).parent.joinpath("unsure.sssom.tsv")


@click.command()
def main() -> None:
    """Fix mappings."""
    mappings, converter, metadata = sssom_pydantic.read(UNSURE_PATH)
    mappings = [fix_mapping(m) for m in mappings]
    sssom_pydantic.write(mappings, UNSURE_PATH, converter=converter, metadata=metadata)


def fix_mapping(mapping: SemanticMapping) -> SemanticMapping:
    return mapping.model_copy(
        update={
            "justification": lexical_matching_process,
            "reviewers": mapping.authors,
            "authors": None,
            "reviewer_agreement": 0.0,
        }
    )

if __name__ == "__main__":
    main()