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Add example taxrank curations to UMLS, NCIT, and SNOMED-CT #265

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cthoyt merged 1 commit into from
May 6, 2026
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Add example taxrank curations to UMLS, NCIT, and SNOMED-CT #265

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4 changes: 4 additions & 0 deletions src/biomappings/resources/positive.sssom.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -68,6 +68,7 @@
# schema: https://schema.org/
# semapv: https://w3id.org/semapv/vocab/
# skos: http://www.w3.org/2004/02/skos/core#
# snomedct: http://snomed.info/id/
# stato: http://purl.obolibrary.org/obo/STATO_
# t4fs: http://purl.obolibrary.org/obo/T4FS_
# taxrank: http://purl.obolibrary.org/obo/TAXRANK_
Expand Down Expand Up @@ -10724,7 +10725,10 @@ reactome:R-SSC-73843 5-Phosphoribose 1-diphosphate biosynthesis debio:0000003 go
reactome:R-XTR-73843 5-Phosphoribose 1-diphosphate biosynthesis debio:0000003 go:0006015 5-phosphoribose 1-diphosphate biosynthetic process semapv:ManualMappingCuration orcid:0000-0003-4423-4370
schema:Book Book skos:exactMatch t4fs:0000305 book semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
schema:Dataset Dataset skos:exactMatch t4fs:0000347 dataset semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
taxrank:0000001 phylum skos:exactMatch ncit:C45277 Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06
taxrank:0000001 phylum skos:exactMatch snomedct:31891000009101 Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06
taxrank:0000001 phylum skos:exactMatch tdwg.taxonrank:Phylum Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-02
taxrank:0000001 phylum skos:exactMatch umls:C1709533 Phylum (taxon) semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06
tdwg.taxonrank:Phylum Phylum skos:exactMatch taxrank:0000001 phylum semapv:MappingInversion orcid:0000-0003-4423-4370 2026-05-02
uberon:0000017 exocrine pancreas skos:exactMatch mesh:D046790 Pancreas, Exocrine semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon:0000076 external ectoderm skos:exactMatch bto:0006242 external ectoderm semapv:ManualMappingCuration orcid:0000-0003-4423-4370 generate_uberon_bto_mappings.py
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