Releases: biopragmatics/biomappings
Releases · biopragmatics/biomappings
v0.5.0
What's Changed
- Simplify data structure by @cthoyt in #211
- Simplify typing by @cthoyt in #213
- Upstream mapping implementation by @cthoyt in #212
- Add flag for progress in embedding matching by @cthoyt in #214
- Add strict typing by @cthoyt in #215
- Upstream SEMAPV references by @cthoyt in #216
- Add type checking on scripts by @cthoyt in #217
- Remove APICURON integration by @cthoyt in #218
- Refactor NDEx upload by @cthoyt in #219
- Consolidate mapping utilities by @cthoyt in #220
- Update cruft by @cthoyt in #223
- Fix creator tabulation by @cthoyt in #222
- Update lexical mapping implementation by @cthoyt in #221
- Refactor prediction appending and add CLI by @cthoyt in #224
- Finish refactoring lexical prediction workflow by @cthoyt in #225
- Remove export of semantic mapping class by @cthoyt in #226
- Refactor web application by @cthoyt in #227
- Reorganize generic curation code by @cthoyt in #228
- Refactor remaining CLI components by @cthoyt in #229
- Upstream implementation to SSSOM Curator by @cthoyt in #232
- Add CHMO to IUPAC Goldbook predictions by @cthoyt in #233
- New updates detected with Cruft by @github-actions[bot] in #239
- Add IUPAC Goldbook - CHMO predicted lexical mappings by @cthoyt in #240
- Predict mappings between OEO and ENVO by @cthoyt in #241
- Update to sssom-pydantic v0.4.0 and sssom-curator v0.3.0 by @cthoyt in #258
- Update project config by @cthoyt in #259
- Map between educational resources by @cthoyt in #204
New Contributors
- @github-actions[bot] made their first contribution in #239
Full Changelog: v0.4.2...v0.5.0
Contributors
cthoyt
Assets 3
v0.4.2
What's Changed
- Add predicted EFO CHEBI compound mappings. by @buzgalbraith in #197
- Curated 5 mappings via Biomappings web app by @bgyori in #201
- Implement embedding-based mapping workflow by @cthoyt in #206
- Add local resolver flag by @cthoyt in #207
- Implement batching in embedding matching by @cthoyt in #208
- Format documentation by @cthoyt in #210
- Add NER-based matching by @cthoyt in #209
- Map Iconclass to ChEBI, OBI, and CHMO by @cthoyt in #205
New Contributors
- @buzgalbraith made their first contribution in #197
Full Changelog: v0.4.1...v0.4.2
Contributors
cthoyt, bgyori, and buzgalbraith
Assets 3
v0.4.1
Contributors
cthoyt
Assets 3
v0.4.0
What's Changed
- Curate CVX mismatches by @cthoyt in #162
- Curated some MONDO-MeSH mappings (sumir) by @sumirp in #152
- Improve docs about data model for predictions by @cthoyt in #163
- Update webapp footer by @bgyori in #164
- Set text-nowrap for -B- and -N- columns by @kkaris in #165
- More ChEBI-MeSH curations by @bgyori in #166
- Update MeSH predictions and curations by @bgyori in #168
- Update package to use snekpack by @cthoyt in #171
- Update Readme by @KrishnaTO in #174
- Curated 10 mappings (sumirpandit) by @sumirp in #169
- Switch to using Bioregistry standard instead of MIRIAM by @cthoyt in #190
- Update PyOBO usage by @cthoyt in #191
- Switch source curation files to SSSOM format by @cthoyt in #192
- Update types and type hints by @cthoyt in #195
- Switch to using Pydantic models by @cthoyt in #196
- Add stripping whitespace to linting by @cthoyt in #194
- Fix summary and add some curations by @cthoyt in #199
New Contributors
- @kkaris made their first contribution in #165
- @KrishnaTO made their first contribution in #174
Full Changelog: v0.3.7...v0.4.0
Contributors
kkaris, cthoyt, and 3 other contributors
Assets 2
v0.3.7
What's Changed
- Enforce using CURIEs for all relationships by @cthoyt in #123
- Ensure SSSOM file is valid by @cthoyt in #155
- Use preferred prefixes in SSSOM by @cthoyt in #157
- Add broad/narrow curation to interface by @cthoyt in #158
- Add custom predictions and custom deployment tutorials by @cthoyt in #160
- Add VO-DrugBank predictions and curations by @cthoyt in #159
Full Changelog: v0.3.6...v0.3.7
Contributors
cthoyt
Assets 2
v0.3.6
What's Changed
- Add summary page button by @cthoyt in #145
- Improve trackability of committer by @cthoyt in #148
- Update testing with py38 by @cthoyt in #150
- Add generic contribution workflow to OBO flat files by @cthoyt in #149
- CVX and MeSH mappings by @cthoyt in #147
- Curated 1 mapping (sumir) by @sumirp in #151
New Contributors
Full Changelog: v0.3.5...v0.3.6
Contributors
cthoyt and sumirp
Assets 2
v0.3.5
Contributors
cthoyt
Assets 2
v0.3.4
Contributors
cthoyt
Assets 2
v0.3.3
What's Changed
Full Changelog: v0.3.2...v0.3.3
Contributors
cthoyt
Assets 2
v0.3.2
What's Changed
- Add UBERON-BTO predictions by @bgyori in #129
- Add custom predictions flag in web app runner by @cthoyt in #130
- Fix gilda prediction workflow by @cthoyt in #131
- Add more curations by @cthoyt in #132
- Add CLO processing notebook by @cthoyt in #133
- Update state handling by @cthoyt in #134
- Additional cell, cell line, and tissue curations by @cthoyt in #135
- Generate MAxO-MeSH predictions by @cthoyt in #137
- Add negative mappings to SSSOM output by @cthoyt in #138
- Enable custom curation files by @cthoyt in #140
Full Changelog: v0.3.1...v0.3.2
Contributors
cthoyt and bgyori