README.md

New repo for growthcurve apps: https://github.com/biosustain/growthcurves_app

! This one is archived !

PioGrowth

Repository for Streamlit app for analysis of optical density (OD) measurements produced mainly with a PioReactor

It was created on the basis of three individual apps

• milnus/pioreactor_turbidostat_shiny
• milnus/Batch_analysis
• milnus/OD_calibration_bioreactor

The code translated to Python was based on the original R code from the Shiny apps.

Install and start app

In a new environment you can install the app using the app's requirements.txt

pip install -r app/requirements.txt

Start the app from the root of the repository (as it's done on Streamlit Cloud):

streamlit run app/main.py

Development environment

Install package so that new code is picked up in a restared python interpreter:

pip install -e ".[dev]"

History

The joint app combining three Shiny apps for PioReactor tools was started as the three individual apps mentioned above using shiny, but never completed. You can find the last development version in the original repository of this fork (see: milnus/PioGrowth).