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DTU Biosustain

The Novo Nordisk Foundation Center for Biosustainability

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  1. potion potion Public

    Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    Python 488 50

  2. cameo cameo Public

    cameo - computer aided metabolic engineering & optimization

    Python 115 45

  3. shu shu Public

    Multi-dimensional, trans-omics metabolic maps.

    Rust 44 1

  4. croissance croissance Public

    Tool for estimating growth rates from microbial growth curves

    Python 28 13

  5. Maud Maud Public

    Enzyme models that take into account kinetics, allostery and thermodynamics

    Python 27 2

  6. snakemake_UmetaFlow snakemake_UmetaFlow Public

    Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

    Python 25 8

Repositories

Showing 10 of 130 repositories
  • benchling-resources Public

    Benchling resources created at DTU Biosustain.

    biosustain/benchling-resources’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 7, 2025
  • Azure-Seqera-Integrator Public
    biosustain/Azure-Seqera-Integrator’s past year of commit activity
    0 0 0 0 Updated Mar 7, 2025
  • bayesian_statistics_for_computational_biology Public archive

    A Bayesian statistics course for computational biologists

    biosustain/bayesian_statistics_for_computational_biology’s past year of commit activity
    HTML 4 CC-BY-4.0 2 0 0 Updated Mar 4, 2025
  • Growth-coupling-suite Public

    A constraint-based metabolic model-based workflow for computing and analyzing microbial strain designs which couple a target reaction to growth

    biosustain/Growth-coupling-suite’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Feb 24, 2025
  • dsp_docker_training Public

    Introduction to Docker

    biosustain/dsp_docker_training’s past year of commit activity
    Python 0 1 0 0 Updated Feb 24, 2025
  • dsp_notes Public

    Public notes and hints of the Data Science Platform.

    biosustain/dsp_notes’s past year of commit activity
    Jupyter Notebook 1 1 0 1 Updated Feb 24, 2025
  • snakemake-ont-bacterial-variants Public Forked from MPUSP/snakemake-ont-bacterial-variants

    A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

    biosustain/snakemake-ont-bacterial-variants’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 17, 2025
  • pankb Public

    The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for 8 major biotech bacteria families.

    biosustain/pankb’s past year of commit activity
    HTML 4 MIT 0 0 0 Updated Feb 10, 2025
  • dsp_metagenomics_training Public

    Introduction course to metagenomics data analysis

    biosustain/dsp_metagenomics_training’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 4, 2025
  • shu Public

    Multi-dimensional, trans-omics metabolic maps.

    biosustain/shu’s past year of commit activity
    Rust 44 Apache-2.0 1 4 0 Updated Feb 3, 2025
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