growthcurves_app/pyproject.toml at main · biosustain/growthcurves_app · GitHub

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# ref: https://setuptools.pypa.io/en/stable/userguide/pyproject_config.html
[project]
authors = [{ name = "Henry Webel", email = "heweb@dtu.dk" }]
description = "Growthcurve Apps related to growthcurves Python package."
name = "growthcurve-app"
# This means: Load the version from git tags via setuptools_scm.
dynamic = [
    "version", # version is loaded from git tags via setuptools_scm
    #"dependencies", # add if using requirements.txt
]
readme = "README.md"
requires-python = ">=3.10" # test all higher Python versions
# These are keywords
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
]
license = "MIT" # https://choosealicense.com/
# # add dependencies here: (use one of the two)
dependencies = [
    "numpy",
    "pandas[excel]",
    "scipy",
    "matplotlib",
    "seaborn",
    # 1.56.0 added st.dataframe(selection_default=...), which Step 1 sample
    # selection needs to restore ticked rows after page navigation.
    "streamlit>=1.56.0",
    "growthcurves",
]
# use requirements.txt instead of pyproject.toml for dependencies
# https://stackoverflow.com/a/73600610/9684872
# ! uncomment also dependencies in the dynamic section above
# [tool.setuptools.dynamic]
# dependencies = {file = ["requirements.txt"]}


[project.urls]
"Bug Tracker" = "https://github.com/biosustain/growthcurves_app/issues"
"Homepage" = "https://github.com/biosustain/growthcurves_app"

[project.optional-dependencies]
# Optional dependencies to locally build the documentation, also used for
# readthedocs.
docs = [
    "sphinx",
    "sphinx-book-theme",
    "myst-nb",
    "ipywidgets",
    "sphinx-new-tab-link!=0.2.2",
    "jupytext",
    "sphinx-copybutton",
    "pandas<3.0.0",
    "croissance",
    "scikit-learn",
]
# local development options
dev = ["black[jupyter]", "ruff", "pytest", "isort", "jupytext", "bump-my-version"]

[tool.ruff]
# https://docs.astral.sh/ruff/rules/#flake8-bandit-s

[tool.ruff.lint]
# https://docs.astral.sh/ruff/tutorial/#rule-selection
# 1. Enable flake8-bugbear (`B`) rules
# 2. Enable pycodestyle (`E`) errors and (`W`) warnings
# 3. Pyflakes (`F`) errors
extend-select = ["E", "W", "F", "B"]
# Ignore line length errors:
# ignore = ["E501"]

[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools>=64", "setuptools_scm>=8"]

[tool.setuptools_scm]
# https://setuptools-scm.readthedocs.io/
# used to pick up the version from the git tags or the latest commit.

# [tool.poetry.requires-plugins]
# poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] }

[tool.poetry]
version = "0.1.0"

# [tool.poetry-dynamic-versioning]
# enable = true

[tool.isort]
profile = "black"