temporarily 'ignored' BICAN UUID column because in the jsonld-context the attribute was being referred to by the id rather than its name

Author: puja-trivedi

linkml-schema/library_generation.yaml

@@ -1862,7 +1862,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-LXUBTM45
-        slot_uri: bican:632d3d3f-f85b-4efc-a1ab-010fe417ae81
         range: sex
       age_at_death_description:
         local_names:
@@ -1874,7 +1873,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-ZJZJLE33
-        slot_uri: bican:0630a265-4a63-48f4-8853-66b929002306
       age_at_death_reference_point:
         local_names:
           NIMP:
@@ -1885,7 +1883,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-RARAGG39
-        slot_uri: bican:3bed1f94-9d82-4ed7-afdf-79d896b24dbb
         range: age_at_death_reference_point
       age_at_death_unit:
         local_names:
@@ -1897,7 +1894,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-AVAVEV39
-        slot_uri: bican:b5436e99-f0a7-4c30-825d-56b88ee2ac1d
         range: age_at_death_unit
       age_at_death_value:
         local_names:
@@ -1908,7 +1904,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-FTFTCP24
-        slot_uri: bican:57e24d3c-c9c7-4ef3-9809-a35802d563ec
         range: float
       species:
         local_names:
@@ -1917,7 +1912,6 @@ classes:
             local_name_value: donor_species
         description: Species of donor.
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
-        slot_uri: bican:6837cb02-6bd7-4fb8-838c-9062ead96ba4
   BrainSlab:
     description: A thick flat piece of brain tissue obtained by slicing a whole brain,
       brain hemisphere or subdivision with a blade at regular interval.  When multiple
@@ -2087,7 +2081,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-RELLGO26
-        slot_uri: bican:baae4ac3-f959-4594-b943-3a82ec19bd34
         range: dissociated_cell_sample_cell_prep_type
       dissociated_cell_oligo_name:
         local_names:
@@ -2103,7 +2096,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-CFCFPS27
-        slot_uri: bican:184abbaf-baff-4b5f-b51e-dd38de6006af
         range: dissociated_cell_sample_cell_label_barcode
   EnrichedCellSample:
     description: A collection of enriched cells or nuclei after enrichment process,
@@ -2173,7 +2165,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-TZTZPI37
-        slot_uri: bican:875f1c70-f5aa-45e3-94b9-5e482f6c4830
         range: string
       enriched_cell_oligo_name:
         local_names:
@@ -2275,7 +2266,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-ONONEV39
-        slot_uri: bican:f10e928d-5a2b-4943-af18-d8fe5d05528d
         range: integer
   AmplifiedCdna:
     description: A collection of cDNA molecules derived and amplified from an input
@@ -2343,7 +2333,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-TITIIC26
-        slot_uri: bican:0db79d05-8612-4896-b9d3-eb1558841449
         range: float
       amplified_cDNA_result:
         local_names:
@@ -2357,7 +2346,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-XXXXFQ31
-        slot_uri: bican:bc62bdb2-7dc8-4404-bb84-ce0bbcae59e5
         range: amplified_cdna_rna_amplification_pass_fail
       percent_cdna_longer_than_400bp:
         local_names:
@@ -2373,7 +2361,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-JJJJWD35
-        slot_uri: bican:8d150467-f69e-461c-b54c-bcfd22f581e5
         range: float
   Library:
     description: A collection of fragmented and barcode-indexed DNA molecules for
@@ -2440,7 +2427,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-VJVJLC46
-        slot_uri: bican:f851eba9-56d1-4472-9d0c-d7f8bc33000a
         range: integer
       concentration_nm:
         local_names:
@@ -2453,7 +2439,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-DCDCLD43
-        slot_uri: bican:90805b3f-f380-4f23-b159-e7eaa0c8f052
         range: float
       library_result:
         local_names:
@@ -2467,7 +2452,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-QHQHQB42
-        slot_uri: bican:6817ede2-7ead-402d-9dbc-131aca627c6c
         range: library_prep_pass_fail
       quantity_fmol:
         local_names:
@@ -2480,7 +2464,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-JYJYDK42
-        slot_uri: bican:4c09ada7-c116-48bc-8fb1-0dcf5c4b939a
         range: float
       library_quantity_ng:
         local_names:
@@ -2491,7 +2474,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-TNTNXP37
-        slot_uri: bican:318b2d3a-dae7-4c63-bfbb-93862b92f63e
         range: float
       r1_r2_index:
         local_names:
@@ -2510,7 +2492,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-VLLMWZ60
-        slot_uri: bican:c94b5d8a-e92d-47af-8c0e-ea3b58be4d06
         range: library_r1_r2_index
   LibraryAliquot:
     description: One library in the library pool. Each library aliquot in a library
@@ -2630,7 +2611,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-WNYWPA48
-        slot_uri: bican:f1fdea98-7849-4def-a62f-a04cbbf98922
         range: string
   DissectionRoiDelineation:
     description: The process of outlining a region of interest on a brain slab image
@@ -2791,7 +2771,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-KJKJZK32
-        slot_uri: bican:aca38100-d245-4be4-9be3-ba27192779fe
         range: string
       input_quantity:
         local_names:
@@ -2805,7 +2784,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-ZZZZWQ40
-        slot_uri: bican:aa534269-7c9b-4b63-b990-eea8cda56d0e
         range: integer
       cell_barcoding_process_date:
         local_names:
@@ -2862,7 +2840,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-OKOKQD38
-        slot_uri: bican:3827634c-3f8f-4760-b358-86ce4b030238
         range: integer
       cDNA_amplification_process_date:
         local_names:
@@ -2873,7 +2850,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-BYBYBY24
-        slot_uri: bican:6cc333e7-9b98-497f-b7b1-eae904db2400
         range: date
       cDNA_amplification_set:
         local_names:
@@ -2887,7 +2863,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-SCSCTM41
-        slot_uri: bican:42e98a88-50b3-4ea2-871b-2142f6a0dfdd
         range: string
   LibraryConstruction:
     description: The process of constructing a library from input material (such as
@@ -2929,7 +2904,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-AJAJCN35
-        slot_uri: bican:7b60d59e-fdd7-4b27-a2d4-cae9b69103a6
         range: library_technique
       library_construction_process_date:
         local_names:
@@ -2940,7 +2914,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-JCJCNM35
-        slot_uri: bican:9c2f575d-1b64-451d-894f-656861afe07a
         range: date
       input_quantity_ng:
         local_names:
@@ -2953,7 +2926,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-AFAFXP37
-        slot_uri: bican:e4d31d97-722d-4771-a0e4-e6062190f2c1
         range: float
       library_construction_set:
         local_names:
@@ -2967,7 +2939,6 @@ classes:
         from_schema: https://identifiers.org/brain-bican/library-generation-schema
         exact_mappings:
         - NIMP:PD-PCPCVR50
-        slot_uri: bican:b124ffa9-9134-4a61-a30d-bb191b2fc7fa
         range: string
   LibraryPooling:
     description: The process of constructing of a libray pool by combining library

linkml-schema/source_library_generation/gsheet_output/Attributes.tsv

@@ -1,5 +1,5 @@
 SubGroup/LinkML Class Name	Proposed BICAN Field	LinkML Attribute 	LinkML Slot	BICAN UUID	Aliases	Definition	Data Type	Multivalued	Permissible Values	Nullable	Data Examples	Min Value	Max Value	Unit	Statistical Type	Subsets	Notes	NIMP Category	NIMP Terminology NHash	NIMP Variable Name	NIMP Variable Name: Source
-> class	ignore	attribute	slot	slot_uri: {curie_prefix: bican}	ignore	description	range	multivalued	ignore	ignore	ignore	ignore	ignore	ignore	ignore	in_subset	ignore	ignore	exact_mappings: {curie_prefix: NIMP}	local_names	local_names
+> class	ignore	attribute	slot	ignore	ignore	description	range	multivalued	ignore	ignore	ignore	ignore	ignore	ignore	ignore	in_subset	ignore	ignore	exact_mappings: {curie_prefix: NIMP}	local_names	local_names
 >																internal_separator: "|"				inner_key: local_name_value	inner_key: local_name_source
 AmplifiedCdna	amplified cDNA amplified quantity ng	amplified_cDNA_quantity_ng		0db79d05-8612-4896-b9d3-eb1558841449	amplified quantity ng	Amount of cDNA produced after cDNA amplification measured in nanograms.	float	FALSE		TRUE						analysis		Amplified cDNA	PD-TITIIC26	amplified_cdna_amplified_quantity_ng	NIMP
 CdnaAmplification	amplified cDNA PCR cycles	pcr_cycles		3827634c-3f8f-4760-b358-86ce4b030238	cDNA amplification cycles	Number of PCR cycles used during cDNA amplification for this cDNA.	integer	FALSE		TRUE						analysis		Amplified cDNA	PD-OKOKQD38	amplified_cdna_pcr_cycles	NIMP