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fixing error in library_generation jsonld-context: incorrect attribute name #199

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Merged
merged 10 commits into from
Sep 24, 2025
Merged

fixing error in library_generation jsonld-context: incorrect attribute name #199

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cdd5d8e
modified google spreadsheet: changing 'alias' to 'ignore' in row 2 fo…
puja-trivedi Sep 24, 2025
781eff4
generate another formats for library_generation model(s)
Sep 24, 2025
2e232c2
changed attribute:'process_date' to 'className_process_date' because …
puja-trivedi Sep 24, 2025
7447e0c
changed attribute:'method' to 'className_method' because this attribu…
puja-trivedi Sep 24, 2025
8a8bb0c
changed attribute:'quantity' to 'className_quantity_ng' because this …
puja-trivedi Sep 24, 2025
d108c54
changed attribute:'set' to 'className_set' because this attribute has…
puja-trivedi Sep 24, 2025
4d0ea0b
changed attribute:'pass_fail_result' to 'className_result' because th…
puja-trivedi Sep 24, 2025
21a6d67
changed attribute:'cell_source_oligo_name' to 'className_oligo_name' …
puja-trivedi Sep 24, 2025
5bcde85
Merge branch 'debug_jsonldcontext_20250924' of https://github.com/puj…
puja-trivedi Sep 24, 2025
03cc28d
generate another formats for library_generation model(s)
Sep 24, 2025
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30 changes: 15 additions & 15 deletions erdiagram-autogen/library_generation.md
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Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,10 @@ LibraryPooling {
label_typeList synonym
}
LibraryConstruction {
library_technique method
date process_date
library_technique library_construction_method
date library_construction_process_date
float input_quantity_ng
string set
string library_construction_set
string id
iri_type iri
uriorcurieList category
Expand All @@ -68,8 +68,8 @@ LibraryConstruction {
}
CdnaAmplification {
integer pcr_cycles
date process_date
string set
date cDNA_amplification_process_date
string cDNA_amplification_set
string id
iri_type iri
uriorcurieList category
Expand All @@ -85,8 +85,8 @@ CdnaAmplification {
CellBarcoding {
string port_well
integer input_quantity
string process_date
barcoded_cell_sample_technique method
string cell_barcoding_process_date
barcoded_cell_sample_technique cell_barcoding_method
string id
iri_type iri
uriorcurieList category
Expand All @@ -113,7 +113,7 @@ EnrichedCellSampleSplitting {
label_typeList synonym
}
CellEnrichment {
string process_date
string cell_enrichment_process_date
string id
iri_type iri
uriorcurieList category
Expand All @@ -127,7 +127,7 @@ CellEnrichment {
label_typeList synonym
}
CellDissociation {
string process_date
string cell_dissociation_process_date
string id
iri_type iri
uriorcurieList category
Expand Down Expand Up @@ -197,9 +197,9 @@ Library {
label_type name
integer average_size_bp
float concentration_nm
library_prep_pass_fail pass_fail_result
library_prep_pass_fail library_result
float quantity_fmol
float quantity_ng
float library_quantity_ng
library_r1_r2_index r1_r2_index
string id
iri_type iri
Expand All @@ -214,8 +214,8 @@ Library {
}
AmplifiedCdna {
label_type name
float quantity_ng
amplified_cdna_rna_amplification_pass_fail pass_fail_result
float amplified_cDNA_quantity_ng
amplified_cdna_rna_amplification_pass_fail amplified_cDNA_result
float percent_cdna_longer_than_400bp
string id
iri_type iri
Expand Down Expand Up @@ -245,7 +245,7 @@ BarcodedCellSample {
EnrichedCellSample {
label_type name
string enrichment_population
string cell_source_oligo_name
string enriched_cell_oligo_name
string histone_modification_marker
string id
iri_type iri
Expand All @@ -261,7 +261,7 @@ EnrichedCellSample {
DissociatedCellSample {
label_type name
dissociated_cell_sample_cell_prep_type cell_prep_type
dissociated_cell_sample_cell_label_barcode cell_source_oligo_name
dissociated_cell_sample_cell_label_barcode dissociated_cell_oligo_name
string id
iri_type iri
uriorcurieList category
Expand Down
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