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CITATION.cff

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# This CITATION.cff file was generated with cffinit.
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# Visit https://bit.ly/cffinit to generate yours today!
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cff-version: 1.2.0
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title: cellfinder
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message: >-
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If you use this software, please cite it using the
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metadata from this file.
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type: software
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authors:
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- given-names: Adam
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family-names: Tyson
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affiliation: 'Sainsbury Wellcome Centre, University College London'
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- given-names: Christian
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family-names: Niedworok
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- given-names: Charly
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family-names: Rousseau
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- given-names: BrainGlobe
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family-names: Developers
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repository-code: 'https://github.com/brainglobe/cellfinder'
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url: 'https://brainglobe.info'
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abstract: >-
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Automated 3D cell detection in very large 3D images (e.g.,
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serial two-photon or lightsheet volumes of whole mouse
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brains).
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license: BSD-3-Clause
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date-released: '2024-01-05'
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year: 2024
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preferred-citation:
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type: article
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authors:
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- given-names: Adam
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family-names: Tyson
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affiliation: 'Sainsbury Wellcome Centre, University College London'
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- given-names: Charly V.
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family-names: Rousseau
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- given-names: Christian J.
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family-names: Niedworok
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- given-names: Sepiedeh
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family-names: Keshavarzi
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- given-names: Chryssanthi
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family-names: Tsitoura
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- given-names: Lee
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family-names: Cossell
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- given-names: Molly
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family-names: Strom
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- given-names: Troy W.
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family-names: Margrie
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doi: "10.1371/journal.pcbi.1009074"
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url: "https://doi.org/10.1371/journal.pcbi.1009074"
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journal: "PLOS Computational Biology"
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month: 5
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year: 2021
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title: "A deep learning algorithm for 3D cell detection in whole mouse brain image datasets"
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issue: 5
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volume: 17
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pages: 1-17
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citation-sentence: "This work makes use of the cellfinder detection algorithm,"

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