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| 1 | +# This CITATION.cff file was generated with cffinit. |
| 2 | +# Visit https://bit.ly/cffinit to generate yours today! |
| 3 | + |
| 4 | +cff-version: 1.2.0 |
| 5 | +title: cellfinder |
| 6 | +message: >- |
| 7 | + If you use this software, please cite it using the |
| 8 | + metadata from this file. |
| 9 | +type: software |
| 10 | +authors: |
| 11 | + - given-names: Adam |
| 12 | + family-names: Tyson |
| 13 | + |
| 14 | + affiliation: 'Sainsbury Wellcome Centre, University College London' |
| 15 | + - given-names: Christian |
| 16 | + family-names: Niedworok |
| 17 | + - given-names: Charly |
| 18 | + family-names: Rousseau |
| 19 | + - given-names: BrainGlobe |
| 20 | + family-names: Developers |
| 21 | + |
| 22 | +repository-code: 'https://github.com/brainglobe/cellfinder' |
| 23 | +url: 'https://brainglobe.info' |
| 24 | +abstract: >- |
| 25 | + Automated 3D cell detection in very large 3D images (e.g., |
| 26 | + serial two-photon or lightsheet volumes of whole mouse |
| 27 | + brains). |
| 28 | +license: BSD-3-Clause |
| 29 | +date-released: '2024-01-05' |
| 30 | +year: 2024 |
| 31 | +preferred-citation: |
| 32 | + type: article |
| 33 | + authors: |
| 34 | + - given-names: Adam |
| 35 | + family-names: Tyson |
| 36 | + affiliation: 'Sainsbury Wellcome Centre, University College London' |
| 37 | + - given-names: Charly V. |
| 38 | + family-names: Rousseau |
| 39 | + - given-names: Christian J. |
| 40 | + family-names: Niedworok |
| 41 | + - given-names: Sepiedeh |
| 42 | + family-names: Keshavarzi |
| 43 | + - given-names: Chryssanthi |
| 44 | + family-names: Tsitoura |
| 45 | + - given-names: Lee |
| 46 | + family-names: Cossell |
| 47 | + - given-names: Molly |
| 48 | + family-names: Strom |
| 49 | + - given-names: Troy W. |
| 50 | + family-names: Margrie |
| 51 | + doi: "10.1371/journal.pcbi.1009074" |
| 52 | + url: "https://doi.org/10.1371/journal.pcbi.1009074" |
| 53 | + journal: "PLOS Computational Biology" |
| 54 | + month: 5 |
| 55 | + year: 2021 |
| 56 | + title: "A deep learning algorithm for 3D cell detection in whole mouse brain image datasets" |
| 57 | + issue: 5 |
| 58 | + volume: 17 |
| 59 | + pages: 1-17 |
| 60 | +citation-sentence: "This work makes use of the cellfinder detection algorithm," |
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