ants-docker

A Dockerfile for ANTs 2.3.1 (Conda-based) with:

• HCP Pipelines cloned at /opt/HCPpipelines
• MNI152 templates downloaded into /atlas

---

Build

docker build -t brainlife/ants-docker:2.3.1 .

---

Run (Docker)

docker run --rm -it \
  brainlife/ants-docker:2.3.1 \
  <your_command>

---

Run (Singularity)

From your local Docker image

singularity build ants-2.3.1.sif \
  docker-daemon://brainlife/ants-docker:2.3.1

singularity exec \
  --bind $(pwd):/workspace \
  ants-2.3.1.sif \
  <your_command>

Directly from Docker Hub

singularity exec \
  docker://brainlife/ants-docker:2.3.1 \
  <your_command>

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Contents

• ANTs 2.3.1 installed in a Conda env named ants-2.3.1
• HCP Pipelines repo: /opt/HCPpipelines
• MNI152 templates unpacked under /atlas