Montepython addons

README.rst

@@ -2,7 +2,7 @@
 Monte Python, a Monte Carlo Markov Chain code (with Class!)
 ===========================================================
 
-:Main developer: Thejs Brinckmann <brinckmann@physik.rwth-aachen.de>
+:Main developer: Thejs Brinckmann <thejs.brinckmann@gmail.com>
 :Author: Benjamin Audren <[email protected]>
 :License: MIT
 
@@ -15,18 +15,56 @@ for the bibtex entries).
 
 Recent changelog
 ----------------
+v3.6.1, June 20, 2024
 
-v3.2.0, Aug 21, 2019
+* Added euclid_spectroscopic and euclid_photometric_alm likelihoods from 2303.09451, 2405.06047 (S. Casas, M. Doerenkamp, J. Lesgourgues, S. Pamuk, L. Rathmann, Sabarish V., N. Schoeneberg)
 
-* Added Planck 2018 likelihoods and example param files (Deanna Hooper)
+v3.6.0, June 1, 2023
 
-* Added BOSS DR12 and eBOSS DR14 Lya and QSO BAO likelihoods from 1906.11628 (James Farr)
+* Added Lyman-alpha alpha-beta-gamma-delta likelihood from 2206.08188 (D. C. Hooper, N. Schoeneberg, R. Murgia)
 
-* Added KiDS+VIKING-450 likelihood from 1812.06076 (KiDS collaboration)
+* Added eBOSS DR16 BAO-only likelihoods (S. Alvi, T. Brinckmann)
 
-* Added KiDS-450 correlation function likelihood from 1809.01406 (Fabian Köhlinger)
+* Added eBOSS DR16 BAO-plus likelihoods (V. Poulin, T. Brinckmann)
+
+* Added Pantheon+ and Pantheon+SH0ES likelihoods (V. Poulin)
+
+* Added KiDS-1000 likelihoods (B. Stoelzner)
+
+* Added S_8 as sampling parameter (B. Stoelzner, T. Brinckmann)
+
+* Various bugfixes and pull requests
+
+v3.5.0, Sep 20, 2021
+
+* Added framework for spectral distortions likelihoods, plus mock FIRAS and PIXIE (D. C. Hooper, M. Lucca, N. Schoeneberg)
+
+* Added new Pantheon likelihood with prior on the absolute magnitude (D. Camarena)
+
+* Updated Pantheon likelihood to latest value
+
+* Various bugfixes related to python2 / python3 compatibility (D. C. Hooper, N. Schoeneberg)
+
+* Various additional bugfixes
+
+v3.4.0, Feb 25, 2021
+
+* Added BBN likelihoods from 1907.11594 (N. Schoeneberg, D. C. Hooper)
+
+* Added H0LICOW likelihoods from 1907.04869 (S. Taubenberger, S. Suyu)
+
+* New feature: experiment specifications passed in .param files now overwrite ones in .data files, which allows for testing different likelihood specifications simultaneously (N. Schoeneberg)
+
+* New plotting features: to_derive allows to add new parameters in the plot file without overwriting the old parameter, and to_reorder allows to choose the order of parameters for the plots (N. Schoeneberg)
+
+* Significant speed-up of Pantheon likelihood (J. Renk)
+
+* Improved treatment of tick limits, sigma bounds, and Omega_m / omega_m (N. Schoeneberg)
+
+* Various bugfixes related to python2 / python3 compatibility (D. C. Hooper, N. Schoeneberg, F. Agocs, J. Renk)
+
+* Various additional bugfixes
 
-* Various bugfixes
 
 Details and Examples
 --------------------
@@ -77,8 +115,8 @@ information to the .data file, e.g. authors and references.
 Prerequisites
 -------------
 
-* You need the python program **version 2.7** or above, but less than 3.0.
-  Note that lower versions of python will work, down to 2.6 (tested), if you
+* You need the python program **version 2.7.x** or **version 3.x**.
+  Note that lower versions of python may work, down to 2.6, if you
   add manually two extra packages
   (`ordereddict <http://code.activestate.com/recipes/576693/>`_ and
   `argparse <https://pypi.python.org/pypi/argparse/1.2.1>`_).
@@ -157,6 +195,9 @@ a version > 2.6.  If this step fails again, kindly ask your system admin, (s)he
 is there for this, after all. Note that the installation (last command) is
 not strictly speaking mandatory.
 
+Take care to use the same Python version when compiling CLASS as will be used
+when running Monte Python.
+
 Remember that if you modify `CLASS` to implement some new physics, you will need to
 perform this part again for the new `CLASS`.
 

README_Ivan

@@ -0,0 +1 @@
+Ivan Debono: Cloned from Brinckmann's Github repository. Version 3.1. on 27 June 2019.

VERSION

@@ -1 +1 @@
-3.2.0
+3.6.1

bestfit/base2018TTTEEE.bestfit

@@ -1,2 +1,2 @@
 #          omega_b,        omega_cdm,      100*theta_s,     ln10^{10}A_s,              n_s,         tau_reio,        A_cib_217,        xi_sz_cib,             A_sz,     ps_A_100_100,     ps_A_143_143,     ps_A_143_217,     ps_A_217_217,         ksz_norm,     gal545_A_100,     gal545_A_143, gal545_A_143_217,     gal545_A_217,    galf_TE_A_100, galf_TE_A_100_143, galf_TE_A_100_217,    galf_TE_A_143, galf_TE_A_143_217,    galf_TE_A_217,       calib_100T,       calib_217T,         A_planck,           z_reio,     Omega_Lambda,              YHe,               H0,              A_s,           sigma8
- 2.234439e-02	 1.208868e-01	 1.041953e+00	 3.035164e+00	 9.596814e-01	 5.070466e-02	 4.575851e+01	 1.763426e-01	 8.291552e+00	 2.369044e+02	 2.957204e+01	 2.713787e+01	 1.063251e+02	 9.419893e+00	 1.059798e+01	 1.243967e+01	 2.208864e+01	 9.926885e+01	 1.135799e-01	 1.344206e-01	 5.408711e-01	 1.911819e-01	 6.840196e-01	 2.181033e+00	 9.996394e-01	 9.982449e-01	 9.992319e-01	 7.339462e+00	 6.801885e-01	 2.478287e-01	 6.708118e+01	 2.080438e-09	 8.084796e-01	
+ 2.237064e-02	 1.214344e-01	 1.041787e+00	 3.050317e+00	 9.622800e-01	 5.508730e-02	 5.488111e+01	 6.576245e-01	 5.683827e+00	 2.685741e+02	 5.464039e+01	 4.956511e+01	 1.095690e+02	 2.096816e+00	 8.919231e+00	 1.205741e+01	 1.902770e+01	 8.699850e+01	 9.311145e-02	 1.353488e-01	 4.859228e-01	 2.480276e-01	 6.734739e-01	 2.123436e+00	 9.992670e-01	 9.978984e-01	 1.000757e+00	 7.795700e+00	 6.767693e-01	 2.478399e-01	 6.685836e+01	 2.112203e-09	 8.165618e-01	

bestfit/base2018TTTEEE_lensing.bestfit

@@ -1,2 +1,2 @@
 #          omega_b,        omega_cdm,      100*theta_s,     ln10^{10}A_s,              n_s,         tau_reio,        A_cib_217,        xi_sz_cib,             A_sz,     ps_A_100_100,     ps_A_143_143,     ps_A_143_217,     ps_A_217_217,         ksz_norm,     gal545_A_100,     gal545_A_143, gal545_A_143_217,     gal545_A_217,    galf_TE_A_100, galf_TE_A_100_143, galf_TE_A_100_217,    galf_TE_A_143, galf_TE_A_143_217,    galf_TE_A_217,       calib_100T,       calib_217T,         A_planck,           z_reio,     Omega_Lambda,              YHe,               H0,              A_s,           sigma8
- 2.226557e-02	 1.210559e-01	 1.041819e+00	 3.046865e+00	 9.649600e-01	 5.439687e-02	 4.979207e+01	 1.891407e-01	 9.829973e+00	 2.267221e+02	 3.054086e+01	 3.546552e+01	 1.100692e+02	 2.433806e+00	 9.585841e+00	 1.191761e+01	 2.162342e+01	 9.656463e+01	 1.231175e-01	 1.276160e-01	 4.821123e-01	 1.962625e-01	 6.873730e-01	 2.196920e+00	 1.000162e+00	 9.981183e-01	 1.000329e+00	 7.742355e+00	 6.783054e-01	 2.477951e-01	 6.690554e+01	 2.104925e-09	 8.155662e-01	
+ 2.236219e-02	 1.201668e-01	 1.041713e+00	 3.045893e+00	 9.661489e-01	 5.475566e-02	 4.267337e+01	 9.013136e-01	 5.661699e+00	 2.509946e+02	 5.132226e+01	 5.577688e+01	 1.288899e+02	 1.792875e+00	 8.956363e+00	 1.167084e+01	 2.029105e+01	 9.471223e+01	 1.376407e-01	 1.345801e-01	 4.822155e-01	 2.206252e-01	 6.608336e-01	 2.199189e+00	 9.995329e-01	 9.978241e-01	 1.000084e+00	 7.743057e+00	 6.835327e-01	 2.478363e-01	 6.726996e+01	 2.102880e-09	 8.117459e-01	

bestfit/base2018TTTEEE_lensing_bao.bestfit

@@ -1,2 +1,2 @@
 #          omega_b,        omega_cdm,      100*theta_s,     ln10^{10}A_s,              n_s,         tau_reio,        A_cib_217,        xi_sz_cib,             A_sz,     ps_A_100_100,     ps_A_143_143,     ps_A_143_217,     ps_A_217_217,         ksz_norm,     gal545_A_100,     gal545_A_143, gal545_A_143_217,     gal545_A_217,    galf_TE_A_100, galf_TE_A_100_143, galf_TE_A_100_217,    galf_TE_A_143, galf_TE_A_143_217,    galf_TE_A_217,       calib_100T,       calib_217T,         A_planck,           z_reio,     Omega_Lambda,              YHe,               H0,              A_s,           sigma8
- 2.245657e-02	 1.191446e-01	 1.042153e+00	 3.050387e+00	 9.626017e-01	 5.780362e-02	 4.575447e+01	 2.571910e-01	 9.349244e+00	 2.164227e+02	 3.166308e+01	 3.552173e+01	 1.118751e+02	 7.203035e+00	 8.436754e+00	 1.202469e+01	 2.112495e+01	 9.870869e+01	 1.046820e-01	 1.174775e-01	 4.748531e-01	 2.039669e-01	 7.265862e-01	 2.207265e+00	 9.996218e-01	 9.980836e-01	 1.001495e+00	 8.013290e+00	 6.910791e-01	 2.478765e-01	 6.786574e+01	 2.112351e-09	 8.094615e-01	
+ 2.255065e-02	 1.193524e-01	 1.041832e+00	 3.055536e+00	 9.686025e-01	 6.016099e-02	 4.703710e+01	 2.820763e-01	 5.456480e+00	 2.512367e+02	 4.897537e+01	 4.340639e+01	 1.213864e+02	 2.371293e-01	 9.590953e+00	 9.694831e+00	 1.626107e+01	 9.030112e+01	 1.089190e-01	 1.468791e-01	 4.452031e-01	 2.273719e-01	 6.908696e-01	 2.096873e+00	 9.997506e-01	 9.979929e-01	 1.000117e+00	 8.227371e+00	 6.895441e-01	 2.479164e-01	 6.776953e+01	 2.123257e-09	 8.130354e-01	

bestfit/base2018TTonly_lensing.bestfit

@@ -1,2 +1,2 @@
 #          omega_b,        omega_cdm,      100*theta_s,     ln10^{10}A_s,              n_s,         tau_reio,        A_cib_217,        xi_sz_cib,             A_sz,     ps_A_100_100,     ps_A_143_143,     ps_A_143_217,     ps_A_217_217,         ksz_norm,     gal545_A_100,     gal545_A_143, gal545_A_143_217,     gal545_A_217,       calib_100T,       calib_217T,         A_planck,           z_reio,     Omega_Lambda,              YHe,               H0,              A_s,           sigma8
- 2.199248e-02	 1.214459e-01	 1.041964e+00	 3.035052e+00	 9.570435e-01	 4.677576e-02	 4.758857e+01	 5.213005e-01	 9.180488e+00	 2.289127e+02	 3.661648e+01	 4.253716e+01	 1.111062e+02	 9.943325e+00	 8.830075e+00	 1.050332e+01	 2.196606e+01	 9.827825e+01	 1.000145e+00	 9.982735e-01	 1.002614e+00	 7.002548e+00	 6.747960e-01	 2.476777e-01	 6.657057e+01	 2.080206e-09	 8.108240e-01	
+ 2.205951e-02	 1.205190e-01	 1.041729e+00	 3.041590e+00	 9.630702e-01	 5.289641e-02	 5.032441e+01	 6.918960e-02	 6.757032e+00	 2.748976e+02	 5.084740e+01	 3.985137e+01	 1.137673e+02	 1.094757e+00	 9.198062e+00	 1.099828e+01	 2.053142e+01	 9.653216e+01	 1.000104e+00	 9.985348e-01	 1.000199e+00	 7.625137e+00	 6.796960e-01	 2.477066e-01	 6.687743e+01	 2.093852e-09	 8.114394e-01	

changelog.dat

@@ -1,3 +1,34 @@
+v3.6.1, + Added euclid_spectroscopic and euclid_photometric_alm likelihoods from 2303.09451, 2405.06047 (S. Casas, M. Doerenkamp, J. Lesgourgues, S. Pamuk, L. Rathmann, Sabarish V., N. Schoeneberg)
+---------------------------------------------------------------------
+v3.6.0  + Added Lyman-alpha alpha-beta-gamma-delta likelihood from 2206.08188 (D. C. Hooper, N. Schoeneberg, R. Murgia)
+        + Added eBOSS DR16 BAO-only likelihoods (S. Alvi, T. Brinckmann)
+        + Added eBOSS DR16 BAO-plus likelihoods (V. Poulin, T. Brinckmann)
+        + Added Pantheon+ and Pantheon+SH0ES likelihoods (V. Poulin)
+        + Added KiDS-1000 likelihoods (B. Stoelzner)
+        + Added S_8 as sampling parameter (B. Stoelzner, T. Brinckmann)
+        + Various bugfixes and pull requests
+---------------------------------------------------------------------
+v3.5.0  + Added framework for spectral distortions likelihoods, plus mock FIRAS and PIXIE (D. C. Hooper, M. Lucca, N. Schoeneberg)
+	+ Added new Pantheon likelihood with prior on the absolute magnitude (D. Camarena)
+	+ Updated Pantheon likelihood to latest value
+	+ Various bugfixes related to python2 / python3 compatibility (D. C. Hooper, N. Schoeneberg)
+	+ Various additional bugfixes
+---------------------------------------------------------------------
+v3.4.0  + Added BBN likelihoods from 1907.11594 (N. Schoeneberg, D. C. Hooper)
+	+ Added H0LICOW likelihoods from 1907.04869 (S. Taubenberger, S. Suyu)
+	+ New feature: experiment specifications passed in .param files now overwrite ones in .data files, which allows for testing different likelihood specifications simultaneously (N. Schoeneberg)
+	+ New plotting features: to_derive allows to add new parameters in the plot file without overwriting the old parameter, and to_reorder allows to choose the order of parameters for the plots (N. Schoeneberg)
+	+ Significant speed-up of Pantheon likelihood (J. Renk)
+	+ Improved treatment of tick limits, sigma bounds, and Omega_m / omega_m (N. Schoeneberg)
+	+ Various bugfixes related to python2 / python3 compatibility (D. C. Hooper, N. Schoeneberg, F. Agocs, J. Renk)
+	+Various additional bugfixes
+---------------------------------------------------------------------
+v3.3.0  + Added python 3 compatibility, python 2.7 still supported (N. Schöneberg, F. Köhlinger)
+	+ Added Lyman-alpha alpha-beta-gamma likelihood from 1907.01496 (M. Archidiacono, D.C. Hooper, R. Murgia)
+	+ Added new type of parameters, derived_lkl, that behave like derived parameters of the likelihood and are not passed to class (D.C. Hooper)
+	+ Added joint prior on sz nuisance parameters for all Planck 18 likelihoods. Bestfits and covmats updated to reflect this (D.C. Hooper)
+	+ Various bugfixes and minor improvements, e.g.	updated example plot file with more options and clarifications
+---------------------------------------------------------------------
 v3.2.0  + Added Planck 2018 likelihoods and example param files (Deanna Hooper)
         + Added BOSS DR12 and eBOSS DR14 Lya and QSO BAO likelihoods from 1906.11628 (James Farr)
         + Added KiDS+VIKING-450 likelihood from 1812.06076 (KiDS collaboration)