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v0.12-beta

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@cwhelan cwhelan released this 02 Feb 19:40
v0.12-beta
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Learn about vigilant mode.

This release upgrades the single sample pipeline to work with the upgrades to gCNV and median-based re-genotyping that were implemented in the joint pipeline. Other changes include:

  • Generates input JSON files and the single-sample pipeline Terra workspace files from templates
  • Allows optional inputs of precomputed module00a files for the single sample pipeline
  • Bug fixes for module 03 and MasterVcfQC
  • Improved resource acquisition and monitoring scripts
  • Implements a sample wide QC step in the single sample pipeline for samples that are outliers in coverage or WGD score
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