v0.20.2-beta

Updates:

• Add TrainGCNV input specifying subset list of samples for training #294

v0.20.1-beta

Updates include: #290

v0.20-beta

Updates include: Scaling updates and bug fixes to MakeCohortVcf implemented as part of processing gnomAD-SV-v3.

Full Changelog: v0.19.4-beta...v0.20-beta

v0.19.4-beta

Updates include:

• Tweaks to AnnotateVcf workflow (#283)
• Updates to ExpansionHunter (#276, #281, #282)
• CI/CD updates (#268, #273)

Full Changelog: v0.19.3-beta...v0.19.4-beta

v0.19.3-beta

Changes include:

• remove bgzip for already-gzipped file in XfBatchEffect.GetFreqTable in #270
• Add subset ped step at start of CleanVcf in #250

Full Changelog: v0.19.2-beta...v0.19.3-beta

v0.19.2-beta

Updates include:

• Drop variants with NA scores in FilterBatchSites
• Efficiency fix for getting male-only variants on chrX in GenerateBatchMetrics
• Docker build updates

Full Changelog: v0.19.1-beta...v0.19.2-beta

v0.19.1-beta

Just #258: fix typo in runtime attributes in AnnotateVcf.wdl

v0.19-beta

Updates include:

• Clean up file headers
• Bug fix for handling male-only events on chrX in GenerateBatchMetrics (again)
• Expose runtime attributes in AnnotateVcf.wdl

Full Changelog: v0.18.5-beta...v0.19-beta

v0.18.5-beta

Updates include:

• Set MELT JVM memory based on machine memory available at runtime, so that out-of-memory issues can be resolved by increasing VM memory

v0.18.4-beta

Updates include:

• Add WDL for GangSTR
• Remove subprocesses in MakeRdTestBed in ClusterBatch for error propagation