v0.18.3-beta

Updates include:

• Expose runtime attributes for metrics workflows
• Replace nested scatter in TinyResolve with subworkflow
• Fix bug in GenerateBatchMetrics that may cause chrX events appearing only in males without read depth support to be filtered out

v0.18.2-beta

Hotfix to CleanVcf1_23 in MakeCohortVcf affecting cohorts with sex designations other than 1 or 2 in the ped file

v0.18.1-beta

Updates include:

• hotfix to handle empty EVIDENCE field in MakeCohortVcf
• add Terra pipeline diagram to Terra dashboard

v0.18-beta

Updates include:

• Super-scaling updates and fixes to MakeCohortVcf
• MiniWDL compatibility fixes
• Dynamic memory allocation for EvidenceQC.MedianCov
• Unique output filenames in a couple of workflows
• Documentation updates

v0.17.4-beta

Hotfix # 2 for FilterBatch subworkflow functionality - PlotSVCountsPerSample inputs

v0.17.3-beta

Hotfix for FilterBatch subworkflow functionality in Terra

v0.17.2-beta

Updates include:

• Documentation updates
• Subdivide FilterBatch into three workflows to enable choice of IQR cutoff

v0.17.1-beta

Quick fix for v0.17-beta - renaming trainGCNV to TrainGCNV consistently

v0.17-beta

Updates include:

• Rename pipeline modules with descriptive names
• Run metrics workflows as part of main workflows for debugging info and ease of testing
• For Terra, add single-batch configs for cohort-level steps

v0.16-beta

Updates include:

• PEP8 linting of all python scripts
• Fix bug in svtest
• Allow missing samples for BAF collection from joint VCF or gVCFs in Module00c
• Add VCF indexes to Module04b outputs to work with cromwell workflow outputs bucket