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Build and use patched gene, variant, and transcript data for RNU4ATAC#1805

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phildarnowsky-broad wants to merge 9 commits intomainfrom
patched_index
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Build and use patched gene, variant, and transcript data for RNU4ATAC#1805
phildarnowsky-broad wants to merge 9 commits intomainfrom
patched_index

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@phildarnowsky-broad
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This adds indices and API changes to allow us to correct the incorrect data related to gene RNU4ATAC without having to rebuild every index. I've tried to write the API changes in terms of helpers that we can re-use in the future, on the theory that this is probably not the last error in the data we'll ever find.

@rileyhgrant
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Nicely done! Went through commit by commit in addition to checking out the currently running demo, and all looked good :)

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