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Pull requests: broadinstitute/gnomad_methods

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Pull requests list

Remove onnx, onnxruntime, skl2onnx from requirements and defer imports
#833 opened Apr 7, 2026 by jkgoodrich Loading…
@mike-w-wilson @jkgoodrich
Bump the pip group across 2 directories with 2 updates dependencies Pull requests that update a dependency file python Pull requests that update Python code
#830 opened Apr 3, 2026 by dependabot bot Loading…
Add per-variant constraint utility functions
#824 opened Mar 18, 2026 by jkgoodrich Loading…
2 of 3 tasks
@klaricch @mike-w-wilson @jkgoodrich
53
update parse_log_file Changelog: ignore
#821 opened Mar 5, 2026 by klaricch Loading…
@klaricch @mike-w-wilson
Add function for exploding intervals to loci Changelog: new feature
#789 opened Jul 3, 2025 by Ruchit10 Loading…
29
Implement Kyle's code for p_de_novo
#771 opened Mar 18, 2025 by KoalaQin • Draft
@KoalaQin
Add filter_meta_array and change filter_arrays_by_meta to support more complex items_to_filter parameters by using filter_meta_array Changelog: new feature
#725 opened Aug 19, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
32
Deprecate get_most_severe_consequence_for_summary in favor of more flexible get_most_severe_csq_from_multiple_csq_lists Changelog: new feature
#714 opened Jun 25, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
27
Initial upload of VQSR workflow Variant QC
#470 opened Jul 22, 2022 by LindoNkambule • Draft
@jkgoodrich
13
Fix ref_allele_mismatch in liftover_expr for indel variants
#273 opened Nov 18, 2020 by mkanai • Draft
3
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