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quantTranscriptomeSAMoutput unrecognized!!

Status: Open.

#113 In broadinstitute/gtex-pipeline;

· yingsun-ucsd opened on Jul 24, 2025

Incorrect version of htslib in dockerfile

Status: Open.

#112 In broadinstitute/gtex-pipeline;

· andreas-lundgren-qlucore opened on Jun 10, 2025

collapse_annotation.py does not work

Status: Open.

#106 In broadinstitute/gtex-pipeline;

· jacob-tye opened on Mar 30, 2025

cluster_prepare_fastqtl fails based on naming scheme of sample map

Status: Open.

#105 In broadinstitute/gtex-pipeline;

· evin-padhi opened on Mar 12, 2025

shutil.rmtree() gives FileNotFoundError when multiple processes are running

Status: Open.

#104 In broadinstitute/gtex-pipeline;

· ljmills opened on Jan 10, 2025

run_rnaseqc.py unrecognized arguments: --unpaired

Status: Open.

#102 In broadinstitute/gtex-pipeline;

· yingsun-ucsd opened on Aug 16, 2024

AttributeError: module 'qtl.io' has no attribute 'sort_bed'

Status: Open.

#99 In broadinstitute/gtex-pipeline;

· isaartiga opened on May 29, 2024

GTEx release V10

Status: Open.

#97 In broadinstitute/gtex-pipeline;

· AEstebanMar opened on Feb 22, 2024

Package versions between README.md and Dockerfile differ

Status: Open.

#86 In broadinstitute/gtex-pipeline;

· VangelisTheodorakis opened on Aug 11, 2023

A default for GTEx run_PEER.R doesn't match the PEER library default

Status: Open.

#80 In broadinstitute/gtex-pipeline;

· kshakir opened on Sep 30, 2022

geTMM normalization

Status: Open.

#77 In broadinstitute/gtex-pipeline;

· ActioTom opened on Jun 18, 2022

ISO test inputs.json

Status: Open.

#65 In broadinstitute/gtex-pipeline;

· leipzig opened on Apr 29, 2021