Skip to content

Adding a WDL to run DORADO for basecalling ONT data#462

Open
jamesemery wants to merge 6 commits intomainfrom
je_addDoradoWDL
Open

Adding a WDL to run DORADO for basecalling ONT data#462
jamesemery wants to merge 6 commits intomainfrom
je_addDoradoWDL

Conversation

@jamesemery
Copy link
Copy Markdown

This is the newest basecaller version that is necessary to get the latest and greatest models from ONT. It now supports similified model definitions like "sup@latest"

- Updated dockstore.yml with dorado basecaller.
- Updated zones for basecalling
- Updated dorado to v1.4.0
- Updated WDL to use latest dorado release
- Fixed output dir for dorado
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants