Adding a WDL to run DORADO for basecalling ONT data#462
Open
jamesemery wants to merge 6 commits intomainfrom
Open
Adding a WDL to run DORADO for basecalling ONT data#462jamesemery wants to merge 6 commits intomainfrom
jamesemery wants to merge 6 commits intomainfrom
Conversation
847626c to
7c97f04
Compare
- Updated dockstore.yml with dorado basecaller. - Updated zones for basecalling - Updated dorado to v1.4.0 - Updated WDL to use latest dorado release - Fixed output dir for dorado
7c97f04 to
a6879e1
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This is the newest basecaller version that is necessary to get the latest and greatest models from ONT. It now supports similified model definitions like "sup@latest"