Restructure as Python package with Docker/CI support#20

Merged

kbryanhsu merged 7 commits intomainfrom

refactor-python-package

Jan 16, 2026

Commits on Jan 16, 2026

Restructure as proper Python package with Docker/CI support

dpark01
and
claude
committed
Fix Docker and Snakemake CI workflows

dpark01
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claude
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Use --lint for Snakemake syntax validation (doesn't require input files)

dpark01
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claude
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Allow Snakemake lint warnings (use py_compile for syntax validation)

dpark01
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claude
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Add merge_group support, bash CMD, fix README Docker path

dpark01
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claude
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Add CodeCov coverage reporting to test workflow

dpark01
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claude
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Fix Snakemake validation, add README badges

dpark01
and
claude
committed