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Include GUI functionality as a default for a more user-friendly experience#37

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kbryanhsu merged 8 commits intomainfrom
gui
Mar 11, 2026
Merged

Include GUI functionality as a default for a more user-friendly experience#37
kbryanhsu merged 8 commits intomainfrom
gui

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added stable implementation of GUI, with evaluate functionality working

kbryanhsu and others added 8 commits March 4, 2026 23:05
The prepare_pset_fasta rule wrote user-provided reverse primers as-is,
but the pipeline expects them stored as the RC (matching the convention
used by the generate command). This caused all primer-target pairs to
fail the amplicon length check in prepare-input, producing 0 output.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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codecov bot commented Mar 11, 2026

Codecov Report

❌ Patch coverage is 4.16667% with 23 lines in your changes missing coverage. Please review.
✅ Project coverage is 53.76%. Comparing base (c30ec65) to head (4c2d06a).
⚠️ Report is 17 commits behind head on main.

Files with missing lines Patch % Lines
src/qprimer_designer/commands/prepare_input.py 5.55% 17 Missing ⚠️
src/qprimer_designer/commands/filter_primers.py 0.00% 4 Missing ⚠️
src/qprimer_designer/commands/generate.py 0.00% 1 Missing ⚠️
src/qprimer_designer/commands/generate_probe.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##            main      #37       +/-   ##
==========================================
+ Coverage   2.04%   53.76%   +51.71%     
==========================================
  Files         25       25               
  Lines       1909     1927       +18     
==========================================
+ Hits          39     1036      +997     
+ Misses      1870      891      -979     

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@kbryanhsu kbryanhsu merged commit 6c00499 into main Mar 11, 2026
17 checks passed
@kbryanhsu kbryanhsu deleted the gui branch March 11, 2026 18:45
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rename evaluation file output names when running in command line file names cannot have spaces in them

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