bugfix: correct type if no males in family

bpblanken · bpblanken · commit 22a744a4ff71 · 2025-04-02T14:34:17.000-04:00
diff --git a/v03_pipeline/lib/misc/sv.py b/v03_pipeline/lib/misc/sv.py
@@ -116,7 +116,7 @@ def overwrite_male_non_par_calls(
         s.sample_id for f in families for s in f.samples.values() if s.sex == Sex.MALE
     }
     male_sample_ids = (
-        hl.set(male_sample_ids) if male_sample_ids else hl.empty_set(hl.str)
+        hl.set(male_sample_ids) if male_sample_ids else hl.empty_set(hl.tstr)
     )
     par_intervals = hl.array(
         [

Original file line number	Diff line number	Diff line change
`@@ -116,7 +116,7 @@ def overwrite_male_non_par_calls(`
`116`	`116`	`s.sample_id for f in families for s in f.samples.values() if s.sex == Sex.MALE`
`117`	`117`	`}`
`118`	`118`	`male_sample_ids = (`
`119`		`- hl.set(male_sample_ids) if male_sample_ids else hl.empty_set(hl.str)`
	`119`	`+ hl.set(male_sample_ids) if male_sample_ids else hl.empty_set(hl.tstr)`
`120`	`120`	`)`
`121`	`121`	`par_intervals = hl.array(`
`122`	`122`	`[`