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DRAGEN/WES/S&R Ploidy Placeholder.

Status: Open.

#1056 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Mar 11, 2025

Update sex & relatedness check to only fail for subsetted samples

Status: Open.

#1051 In broadinstitute/seqr-loading-pipelines;

· jklugherz opened on Feb 26, 2025

Decouple rsync task from RUN_PIPELINE_ON_DATAPROC feature flag.

bug

low priority

Status: Open.

#1037 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Feb 12, 2025

Ensure multiple projects failing "remap/subset" validation are written to validation_errors.

bug

Status: Open.

#1021 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Jan 16, 2025

Get remap IDs from pedigree instead of remap files

Status: Open.

#1020 In broadinstitute/seqr-loading-pipelines;

· lynnpais opened on Jan 16, 2025

Cache gene_id mappings w/ reference_data.

Status: Open.

#1010 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Jan 9, 2025

Investigate duplicate scores in dbnsfp, eigen, mitimpact, hmtvar, hgmd, splice_ai, topmed.

Status: Open.

#993 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Nov 27, 2024

Figure out how to get airflow to use pipeline-runner dataproc.

Q3

Status: Open.

#943 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Oct 29, 2024

Deploy pipeline-runner on k8s.

Q3

Status: Open.

#942 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Oct 29, 2024

Add pipeline-runner service account with appropriate permissions.

Q3

Status: Open.

#941 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Oct 29, 2024

Re-think delivery of runs/metadata.json and runs/validation_errors.json.

Status: Open.

#914 In broadinstitute/seqr-loading-pipelines;

· bpblanken opened on Sep 30, 2024

Move sex checks out of data loading pipeline

blocked

Sex and Relatedness

Status: Open.

#870 In broadinstitute/seqr-loading-pipelines;

· lynnpais opened on Aug 13, 2024