Merge branch 'main' of github.com:broadinstitute/seqr-loading-pipelines into dev

Author: bpblanken

v03_pipeline/lib/core/dataset_type.py

@@ -364,6 +364,10 @@ def export_vcf_annotation_fns(self) -> list[Callable[..., hl.Expression]]:
     def should_write_new_variant_details(self):
         return self == DatasetType.SNV_INDEL
 
+    @property
+    def should_write_new_variant_details(self):
+        return self == DatasetType.SNV_INDEL
+
     @property
     def overwrite_male_non_par_calls(self) -> None:
         return self == DatasetType.SV

v03_pipeline/lib/paths.py

@@ -344,6 +344,21 @@ def new_variant_details_parquet_path(
     )
 
 
+def new_variant_details_parquet_path(
+    reference_genome: ReferenceGenome,
+    dataset_type: DatasetType,
+    run_id: str,
+) -> str:
+    return os.path.join(
+        runs_path(
+            reference_genome,
+            dataset_type,
+        ),
+        run_id,
+        'new_variant_details.parquet',
+    )
+
+
 def new_variants_parquet_path(
     reference_genome: ReferenceGenome,
     dataset_type: DatasetType,