lift out of block

Author: bpblanken

v03_pipeline/lib/misc/clickhouse.py

@@ -663,14 +663,15 @@ def insert_new_entries(
             )
         """
 
-        if (
-            'is_gnomad_gt_5_percent' in dst_cols
-            and 'is_gnomad_gt_5_percent' not in src_cols
-        ):
-            common.append('is_gnomad_gt_5_percent')
-            overrides['is_gnomad_gt_5_percent'] = f"""
-                dictGetOrDefault({ClickhouseReferenceDataset.GNOMAD_GENOMES.search_path(table_name_builder)}, 'filter_af', key, 0) > 0.05
-            """
+    if (
+        'is_gnomad_gt_5_percent' in dst_cols
+        and 'is_gnomad_gt_5_percent' not in src_cols
+    ):
+        common.append('is_gnomad_gt_5_percent')
+        overrides['is_gnomad_gt_5_percent'] = f"""
+            dictGetOrDefault({ClickhouseReferenceDataset.GNOMAD_GENOMES.search_path(table_name_builder)}, 'filter_af', key, 0) > 0.05
+        """
+
     dst_list = ', '.join(common)
     src_list = ', '.join([overrides.get(c, c) for c in common])
     logged_query(