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correct import
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v03_pipeline/lib/tasks/validate_callset.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -8,7 +8,7 @@
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SeqrValidationError,
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)
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from v03_pipeline.lib.paths import (
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imported_callset_path,
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postprocessed_callset_path,
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valid_reference_dataset_path,
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)
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from v03_pipeline.lib.reference_datasets.reference_dataset import ReferenceDataset
@@ -56,7 +56,7 @@ def complete(self) -> luigi.Target:
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def output(self) -> luigi.Target:
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return GCSorLocalTarget(
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imported_callset_path(
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postprocessed_callset_path(
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self.reference_genome,
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self.dataset_type,
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self.callset_path,
@@ -86,7 +86,7 @@ def requires(self) -> list[luigi.Task]:
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def update_table(self, mt: hl.MatrixTable) -> hl.MatrixTable:
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mt = hl.read_matrix_table(
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imported_callset_path(
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postprocessed_callset_path(
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self.reference_genome,
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self.dataset_type,
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self.callset_path,

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