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lines changed Original file line number Diff line number Diff line change 88 SeqrValidationError ,
99)
1010from v03_pipeline .lib .paths import (
11- imported_callset_path ,
11+ postprocessed_callset_path ,
1212 valid_reference_dataset_path ,
1313)
1414from v03_pipeline .lib .reference_datasets .reference_dataset import ReferenceDataset
@@ -56,7 +56,7 @@ def complete(self) -> luigi.Target:
5656
5757 def output (self ) -> luigi .Target :
5858 return GCSorLocalTarget (
59- imported_callset_path (
59+ postprocessed_callset_path (
6060 self .reference_genome ,
6161 self .dataset_type ,
6262 self .callset_path ,
@@ -86,7 +86,7 @@ def requires(self) -> list[luigi.Task]:
8686
8787 def update_table (self , mt : hl .MatrixTable ) -> hl .MatrixTable :
8888 mt = hl .read_matrix_table (
89- imported_callset_path (
89+ postprocessed_callset_path (
9090 self .reference_genome ,
9191 self .dataset_type ,
9292 self .callset_path ,
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