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bugfix: run vep85 for GRCh37
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loading_pipeline/lib/tasks/dataproc/create_dataproc_cluster.py

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Original file line numberDiff line numberDiff line change
@@ -133,7 +133,11 @@ def get_cluster_config(
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'execution_timeout': {'seconds': 1200},
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},
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{
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'executable_file': f'gs://seqr-pipeline-runner-builds/{Env.DEPLOYMENT_TYPE}/{Env.PIPELINE_RUNNER_APP_VERSION}/bin/dataproc_vep_init.bash',
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'executable_file': (
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f'gs://seqr-pipeline-runner-builds/{Env.DEPLOYMENT_TYPE}/{Env.PIPELINE_RUNNER_APP_VERSION}/bin/dataproc_vep_init.bash'
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if reference_genome == ReferenceGenome.GRCh38
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else f'gs://hail-common/hailctl/dataproc/{HAIL_VERSION}/vep-GRCh37.sh'
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),
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'execution_timeout': {'seconds': 1200},
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},
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],

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