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1 parent a23573f commit e9ae1a4Copy full SHA for e9ae1a4
loading_pipeline/lib/tasks/dataproc/create_dataproc_cluster.py
@@ -133,7 +133,11 @@ def get_cluster_config(
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'execution_timeout': {'seconds': 1200},
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},
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{
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- 'executable_file': f'gs://seqr-pipeline-runner-builds/{Env.DEPLOYMENT_TYPE}/{Env.PIPELINE_RUNNER_APP_VERSION}/bin/dataproc_vep_init.bash',
+ 'executable_file': (
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+ f'gs://seqr-pipeline-runner-builds/{Env.DEPLOYMENT_TYPE}/{Env.PIPELINE_RUNNER_APP_VERSION}/bin/dataproc_vep_init.bash'
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+ if reference_genome == ReferenceGenome.GRCh38
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+ else f'gs://hail-common/hailctl/dataproc/{HAIL_VERSION}/vep-GRCh37.sh'
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+ ),
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],
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