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fix: use string concatenation for out_filename/out_compressed in pars… viral-pipelines CI #3849: Commit 22b9c8c pushed by carze
31m 41s ca-kb_python
ca-kb_python
31m 41s
PR #632 CodeQL #714: by carze
53s refs/pull/632/head
refs/pull/632/head
53s
fix: derive output filename from input sample ID in summarize_kb_extr… viral-pipelines CI #3848: Commit 6252ef7 pushed by carze
4m 53s ca-kb_python
ca-kb_python
4m 53s
PR #632 CodeQL #713: by carze
56s refs/pull/632/head
refs/pull/632/head
56s
PR #632 CodeQL #712: by carze
1m 1s refs/pull/632/head
refs/pull/632/head
1m 1s
chore: tweak workflow output names to use _classified suffix viral-pipelines CI #3847: Commit c27e0ab pushed by carze
5m 7s ca-kb_python
ca-kb_python
5m 7s
PR #632 CodeQL #711: by carze
57s refs/pull/632/head
refs/pull/632/head
57s
chore: rename workflow outputs for Terra table column naming viral-pipelines CI #3846: Commit 0a7f99b pushed by carze
2m 15s ca-kb_python
ca-kb_python
2m 15s
PR #632 CodeQL #710: by carze
55s refs/pull/632/head
refs/pull/632/head
55s
fix: enable multi-threaded zstd decompression in centrifuger task viral-pipelines CI #3845: Commit cdc9958 pushed by carze
27m 13s ca-kb_python
ca-kb_python
27m 13s
PR #632 CodeQL #709: by carze
1m 10s refs/pull/632/head
refs/pull/632/head
1m 10s
fix: remove invalid READ1_SUFFIX/READ2_SUFFIX params from picard SamT… viral-pipelines CI #3844: Commit 4792479 pushed by carze
14m 15s ca-kb_python
ca-kb_python
14m 15s
PR #632 CodeQL #708: by carze
54s refs/pull/632/head
refs/pull/632/head
54s
fix: stream zstd writes and raise memory in parse_kraken2_reads viral-pipelines CI #3843: Commit b98195e pushed by carze
22m 57s ca-kb_python
ca-kb_python
22m 57s
PR #632 CodeQL #707: by carze
53s refs/pull/632/head
refs/pull/632/head
53s
fix: add GB unit to size() calls in parse_kraken2_reads disk formula viral-pipelines CI #3842: Commit 9f3d1d9 pushed by carze
26m 46s ca-kb_python
ca-kb_python
26m 46s
PR #632 CodeQL #706: by carze
57s refs/pull/632/head
refs/pull/632/head
57s
chore: bump viral-ngs to 3.0.11 across all remaining task files viral-pipelines CI #3841: Commit c3e7209 pushed by carze
27m 10s ca-kb_python
ca-kb_python
27m 10s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3840: Pull request #632 synchronize by carze
26m 34s ca-kb_python
ca-kb_python
26m 34s
PR #632 CodeQL #705: by carze
52s refs/pull/632/head
refs/pull/632/head
52s
fix: use machine_mem_gb variable and mem1 instance types in new metag… viral-pipelines CI #3839: Commit 4dc7ec3 pushed by carze
1m 44s ca-kb_python
ca-kb_python
1m 44s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3838: Pull request #632 synchronize by carze
25m 45s ca-kb_python
ca-kb_python
25m 45s
PR #632 CodeQL #704: by carze
51s refs/pull/632/head
refs/pull/632/head
51s
fix: bump viral-ngs to 3.0.11 to match master requirements-modules.txt viral-pipelines CI #3837: Commit 5134809 pushed by carze
2m 3s ca-kb_python
ca-kb_python
2m 3s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3836: Pull request #632 synchronize by carze
1m 43s ca-kb_python
ca-kb_python
1m 43s