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bugfix output location of fasta in download_annotations; pass NCBI API key to tasks: download_fasta, download_annotations#481

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tomkinsc wants to merge 5 commits intomasterfrom
ct-bugfix-ncbi-fasta-fetch
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bugfix output location of fasta in download_annotations; pass NCBI API key to tasks: download_fasta, download_annotations#481
tomkinsc wants to merge 5 commits intomasterfrom
ct-bugfix-ncbi-fasta-fetch

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  • bugfix output location of fasta in download_annotations
  • pass NCBI API key to tasks: download_fasta, download_annotations

…I key to tasks: download_fasta, download_annotations

bugfix output location of fasta in download_annotations; pass NCBI API key to tasks: download_fasta, download_annotations
…subdir

write combined fasta as temp file, then move to final output path in subdir to avoid potential collision in the vase where the output prefix matches one of the accessions
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