v2.5.10.0

What's Changed

• align_and_annot_transfer_single: parameterize mem; set default mem higher 15GB->30GB; increase cpu count 4->8; strip other fasta extensions in genbank_single and impose regex on assembly_id pattern; map 'sus scrofa [domesticus]' to 'swine' in biosample_to_genbank by @tomkinsc in #588
• run_discordance task: first index the ref fasta by @tomkinsc in #596
• genbank_single: add ability to custom override references by @dpark01 in #597
• bump viral-assemble to 2.4.2.0 by @dpark01 in #598
• bump vadr docker 1.6.3 to 1.6.4 model-free by @dpark01 in #599
• Add CLAUDE.md and bump viral-assemble to 2.4.3.1 by @dpark01 in #602
• Add simulate_illumina_reads workflow for synthetic test data generation by @dpark01 in #604
• bump viral-baseimage to 0.3.0; update version-wdl-runtimes.sh for cross-platform execution with either GNU/Linux or macOS/BSD syntax; set requirements-modules.txt path if unspecified by @tomkinsc in #601
• optimizations and more output for classify_single and assemble_denovo_metagenomic by @dpark01 in #605
• Fix MultiQC task failure when all input files are empty/invalid by @dpark01 in #606
• Fix MultiQC task to handle crashes from empty/invalid FastQC zip files by @dpark01 in #607
• Demultiplexing of Illumina flowcells optionally with inline barcodes by @tomkinsc in #600
• Implement load_illumina_fastqs workflow by @dpark01 in #609

Full Changelog: v2.4.1.1...v2.5.10.0